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	<title>Neurobot &#187; Software</title>
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	<link>http://neurobot.bio.auth.gr</link>
	<description>A computational neuroscience and neuroinformatics blog</description>
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		<title>A discriminative covariance-reduction approach for BCIs</title>
		<link>http://neurobot.bio.auth.gr/2019/a-discriminative-covariance-reduction-approach-for-bcis/</link>
		<comments>http://neurobot.bio.auth.gr/2019/a-discriminative-covariance-reduction-approach-for-bcis/#comments</comments>
		<pubDate>Fri, 06 Dec 2019 13:38:44 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[Software]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=4082</guid>
		<description><![CDATA[A Riemannian geometry approach to reduced and discriminative covariance estimation in Brain Computer Interfaces: Github]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2019/a-discriminative-covariance-reduction-approach-for-bcis/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>NeuroElectro: organizing information on cellular neurophysiology</title>
		<link>http://neurobot.bio.auth.gr/2015/neuroelectro-organizing-information-on-cellular-neurophysiology/</link>
		<comments>http://neurobot.bio.auth.gr/2015/neuroelectro-organizing-information-on-cellular-neurophysiology/#comments</comments>
		<pubDate>Thu, 07 May 2015 17:32:06 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[Software]]></category>
		<category><![CDATA[Modelling]]></category>
		<category><![CDATA[Neural coding]]></category>
		<category><![CDATA[Neurophysiology]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=3682</guid>
		<description><![CDATA[NeuroElectro is a framework for organizing information on the cellular neurophysiology of different neuron types. Its goal is to extract information about the electrophysiological properties (e.g. resting membrane potentials and membrane time constants) of diverse neuron types from the existing literature and place it into a centralized database. Read more: http://www.neuroelectro.org]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2015/neuroelectro-organizing-information-on-cellular-neurophysiology/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>The NeuroScience Gateway portal offers free access to supercomputers for parallel simulations</title>
		<link>http://neurobot.bio.auth.gr/2014/the-neuroscience-gateway-portal-offers-free-access-to-supercomputers-for-parallel-simulations/</link>
		<comments>http://neurobot.bio.auth.gr/2014/the-neuroscience-gateway-portal-offers-free-access-to-supercomputers-for-parallel-simulations/#comments</comments>
		<pubDate>Mon, 24 Mar 2014 09:34:36 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[Software]]></category>
		<category><![CDATA[Computational Neuroscience]]></category>
		<category><![CDATA[Modelling]]></category>
		<category><![CDATA[Neurophysiology]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=3560</guid>
		<description><![CDATA[The NeuroScience Gateway portal provides free access to computational neuroscientists to run parallel simulations, free of charge, on supercomputers using tools like GENESIS, NEURON, NEST, Brian, and PyNN.To get started, visit http://www.nsgportal.org]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2014/the-neuroscience-gateway-portal-offers-free-access-to-supercomputers-for-parallel-simulations/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>The Nengo Neural Simulator</title>
		<link>http://neurobot.bio.auth.gr/2013/the-nengo-neural-simulator/</link>
		<comments>http://neurobot.bio.auth.gr/2013/the-nengo-neural-simulator/#comments</comments>
		<pubDate>Wed, 26 Jun 2013 19:47:45 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[Software]]></category>
		<category><![CDATA[Modelling]]></category>
		<category><![CDATA[Neural Networks]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=3436</guid>
		<description><![CDATA[Nengo is a new graphical and scripting based software package for simulating large-scale neural systems. Nengo helps make detailed spiking neuron models that implement complex high-level cognitive algorithms. Among other things, Nengo has been used to implement motor control, visual attention, serial recall, action selection, working memory, attractor networks, inductive reasoning, path integration, and planning [...]]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2013/the-nengo-neural-simulator/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>Dominant-Sets clustering for spike sorting</title>
		<link>http://neurobot.bio.auth.gr/2013/dominant-sets-clustering-for-spike-sorting/</link>
		<comments>http://neurobot.bio.auth.gr/2013/dominant-sets-clustering-for-spike-sorting/#comments</comments>
		<pubDate>Wed, 30 Jan 2013 20:46:48 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[Software]]></category>
		<category><![CDATA[Tutorials]]></category>
		<category><![CDATA[Clustering]]></category>
		<category><![CDATA[Sparse neurons]]></category>
		<category><![CDATA[Spike Sorting]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=3353</guid>
		<description><![CDATA[The decision about the actual number of active neurons is an open issue in spike sorting, with sparsely firing neurons and background activity the most influencing factors. Dominant-sets clustering algorithm is a graph-theoretical algorithmic procedure that successfully addresses this issue. The quality of grouping in the data is evaluated with the estimation of &#8216;cohesiveness&#8217;, i.e. [...]]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2013/dominant-sets-clustering-for-spike-sorting/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>Using ISOMAP algorithm for feature extraction in spike sorting</title>
		<link>http://neurobot.bio.auth.gr/2013/using-isomap-algorithm-for-feature-extraction-in-spike-sorting/</link>
		<comments>http://neurobot.bio.auth.gr/2013/using-isomap-algorithm-for-feature-extraction-in-spike-sorting/#comments</comments>
		<pubDate>Wed, 30 Jan 2013 20:02:43 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[Software]]></category>
		<category><![CDATA[Tutorials]]></category>
		<category><![CDATA[Dimensionality Reduction]]></category>
		<category><![CDATA[Sparse neurons]]></category>
		<category><![CDATA[Spike Sorting]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=3326</guid>
		<description><![CDATA[Background noise and spike overlap pose problems in contemporary spike-sorting strategies. The (non-linear) isometric feature mapping (ISOMAP) technique reveals the intrinsic data structure and helps with recognising the involved neurons. To reproduce this tutorial in MATLAB you will need : 1. ISOMAP source code for MATLAB (for more information and updated version see here: http://isomap.stanford.edu) [...]]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2013/using-isomap-algorithm-for-feature-extraction-in-spike-sorting/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>NeuroRighter</title>
		<link>http://neurobot.bio.auth.gr/2012/neurorighter/</link>
		<comments>http://neurobot.bio.auth.gr/2012/neurorighter/#comments</comments>
		<pubDate>Thu, 06 Dec 2012 09:53:01 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[Software]]></category>
		<category><![CDATA[neural recordings]]></category>
		<category><![CDATA[Neurophysiology]]></category>
		<category><![CDATA[Spike Sorting]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=3318</guid>
		<description><![CDATA[NeuroRighter is an open-source system for multi-electrode closed-loop recording and stimulation originally produced by the Potter Lab at Georgia Tech. The software is free, and the hardware schematics and layouts are free for download. NeuroRighter is available here]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2012/neurorighter/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>People with paralysis control robotic arms using brain-computer interface</title>
		<link>http://neurobot.bio.auth.gr/2012/people-with-paralysis-control-robotic-arms-using-brain-computer-interface/</link>
		<comments>http://neurobot.bio.auth.gr/2012/people-with-paralysis-control-robotic-arms-using-brain-computer-interface/#comments</comments>
		<pubDate>Tue, 21 Aug 2012 10:02:29 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[Software]]></category>
		<category><![CDATA[Brain Interfaces]]></category>
		<category><![CDATA[Spike Sorting]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=3265</guid>
		<description><![CDATA[Advances in brain-computer interfaces, restorative neurotechnology, and assistive robot technology reported in Nature by the BrainGate2 collaboration of researchers, allowed two people with tetraplegia to reach for and grasp objects in three-dimensional space using robotic arms that they controlled directly with brain activity. The BrainGate2 pilot clinical trial employs the investigational BrainGate system, initially developed [...]]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2012/people-with-paralysis-control-robotic-arms-using-brain-computer-interface/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>Restoration of grasp following paralysis through brain-controlled stimulation of muscles</title>
		<link>http://neurobot.bio.auth.gr/2012/restoration-of-grasp-following-paralysis-through-brain-controlled-stimulation-of-muscles/</link>
		<comments>http://neurobot.bio.auth.gr/2012/restoration-of-grasp-following-paralysis-through-brain-controlled-stimulation-of-muscles/#comments</comments>
		<pubDate>Tue, 10 Jul 2012 19:54:34 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[Software]]></category>
		<category><![CDATA[Brain Interfaces]]></category>
		<category><![CDATA[neural recordings]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=3233</guid>
		<description><![CDATA[Researchers have developed a brain-controlled functional electrical stimulation (FES) system in primates. Electrode recordings, from micro-electrodes permanently implanted in the brain, are used to predict the intended activity of several of the paralysed muscles. These predictions are further employed for the intensity control of stimulation of the same muscles. This process of bypassing the spinal [...]]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2012/restoration-of-grasp-following-paralysis-through-brain-controlled-stimulation-of-muscles/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>The Virtual Brain</title>
		<link>http://neurobot.bio.auth.gr/2012/the-virtual-brain/</link>
		<comments>http://neurobot.bio.auth.gr/2012/the-virtual-brain/#comments</comments>
		<pubDate>Wed, 16 May 2012 19:16:39 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[Software]]></category>
		<category><![CDATA[Brain Research]]></category>
		<category><![CDATA[Modelling]]></category>
		<category><![CDATA[Neurophysiology]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=3188</guid>
		<description><![CDATA[The Virtual Brain will deliver the first open simulation of the human brain based on individual large-scale connectivity. First teaser release of The Virtual Brain software suite available for download &#8211; for Windows, Mac and Linux: http://thevirtualbrain.org/]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2012/the-virtual-brain/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>TRENTOOL: A Matlab open source toolbox to analyse information flow in time series data with transfer entropy</title>
		<link>http://neurobot.bio.auth.gr/2012/trentool-a-matlab-open-source-toolbox-to-analyse-information-flow-in-time-series-data-with-transfer-entropy/</link>
		<comments>http://neurobot.bio.auth.gr/2012/trentool-a-matlab-open-source-toolbox-to-analyse-information-flow-in-time-series-data-with-transfer-entropy/#comments</comments>
		<pubDate>Mon, 16 Apr 2012 10:42:39 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[Software]]></category>
		<category><![CDATA[Neural Networks]]></category>
		<category><![CDATA[Statistical Analysis]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=3176</guid>
		<description><![CDATA[TRENTOOL is an implementation of transfer entropy and mutual information analysis based on Wiener&#8217;s causality principle, aiming at the detection of model-free neuronal interactions in neural networks. TRENTOOL is available as an open-source MATLAB toolbox, available under an open source license (GPL v3), &#8220;that allows the user to handle the considerable complexity of this measure [...]]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2012/trentool-a-matlab-open-source-toolbox-to-analyse-information-flow-in-time-series-data-with-transfer-entropy/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>LFPy &#124; Extracellular field potential add-on for NEURON simulator</title>
		<link>http://neurobot.bio.auth.gr/2012/lfpy-extracellular-field-potential-add-on-for-neuron-simulator/</link>
		<comments>http://neurobot.bio.auth.gr/2012/lfpy-extracellular-field-potential-add-on-for-neuron-simulator/#comments</comments>
		<pubDate>Wed, 14 Mar 2012 15:41:49 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[Software]]></category>
		<category><![CDATA[LFP]]></category>
		<category><![CDATA[Modelling]]></category>
		<category><![CDATA[Neurophysiology]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=3162</guid>
		<description><![CDATA[LFPy is a Python package for calculation of extracellular potentials from multicompartment neuron models. It relies on the NEURON simulator and uses the Python interface it provides. LFPy provides a set of easy-to-use Python classes for setting up your model, running your simulations and calculating the extracellular potentials arising from activity in your model neuron. If you have [...]]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2012/lfpy-extracellular-field-potential-add-on-for-neuron-simulator/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>Nev2lkit enhanced demo</title>
		<link>http://neurobot.bio.auth.gr/2011/nev2lkit-enhanced-demo/</link>
		<comments>http://neurobot.bio.auth.gr/2011/nev2lkit-enhanced-demo/#comments</comments>
		<pubDate>Thu, 19 May 2011 17:19:40 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[Software]]></category>
		<category><![CDATA[Clustering]]></category>
		<category><![CDATA[Dimensionality Reduction]]></category>
		<category><![CDATA[Spike Sorting]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=2962</guid>
		<description><![CDATA[An example of a spike sorting task using &#8216;nev2lkit enhanced&#8216; tool. Nev2lkit acts as a preprocessor for the extracellularly recorded data, extracting neural waveforms (i.e. spikes) from the continuous time series. Nev2lkit enhanced features user-customized optimization of the time-window used during the spike extraction procedure. Consequently, Nev2lkit employs Principal Component Analysis (PCA) in the spike [...]]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2011/nev2lkit-enhanced-demo/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
<enclosure url="http://neurobot.bio.auth.gr/wp-content/uploads/2011/05/nev2lkit.mov" length="1886593" type="video/quicktime" />
		</item>
		<item>
		<title>INCF proposals for Google Summer of Code 2011</title>
		<link>http://neurobot.bio.auth.gr/2011/incf-proposals-for-google-summer-of-code-2011/</link>
		<comments>http://neurobot.bio.auth.gr/2011/incf-proposals-for-google-summer-of-code-2011/#comments</comments>
		<pubDate>Sat, 26 Mar 2011 20:17:08 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[Software]]></category>
		<category><![CDATA[Brain Research]]></category>
		<category><![CDATA[Modelling]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=2894</guid>
		<description><![CDATA[INCF has published a list of potential projects within Google Summer of Code 2011. The INCF is a professional organization devoted to advancing the field of neuroinformatics. One of its aims is to develop an international neuroinformatics infrastructure, which promotes the sharing of data and computing resources to the international research community. For more details, [...]]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2011/incf-proposals-for-google-summer-of-code-2011/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>NeuroMorpho.Org</title>
		<link>http://neurobot.bio.auth.gr/2010/neuromorpho-org/</link>
		<comments>http://neurobot.bio.auth.gr/2010/neuromorpho-org/#comments</comments>
		<pubDate>Thu, 23 Dec 2010 09:07:44 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[Software]]></category>
		<category><![CDATA[Brain Research]]></category>
		<category><![CDATA[Neurophysiology]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=2771</guid>
		<description><![CDATA[NeuroMorpho.Org is a centrally curated inventory of digitally reconstructed neurons associated with peer-reviewed publications. It contains contributions from over 40 laboratories worldwide and is continuously updated as new morphological reconstructions are collected, published, and shared. To date, NeuroMorpho.Org is the largest collection of publicly accessible 3D neuronal reconstructions and associated metadata. The goal of NeuroMorpho.Org is to [...]]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2010/neuromorpho-org/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>Neurotycho</title>
		<link>http://neurobot.bio.auth.gr/2010/neurotycho/</link>
		<comments>http://neurobot.bio.auth.gr/2010/neurotycho/#comments</comments>
		<pubDate>Sun, 19 Dec 2010 19:09:50 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[Software]]></category>
		<category><![CDATA[Brain Research]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=2749</guid>
		<description><![CDATA[Neurotycho aims to share reliable massive neural and behavioral data for understanding brain mechanism. The dataset was recorded and distributed by Laboratory for Adaptive Intelligence, BSI, RIKEN. It is not only for neuroscientists but for everyone who is interested in learning neural mechanism. Neurotycho.org is organized by Dr. Naotaka Fujii, who is a laboratory head [...]]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2010/neurotycho/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>Neurodebian &#8211; the Debian Neuroscience Repository</title>
		<link>http://neurobot.bio.auth.gr/2010/neurodebian-the-debian-neuroscience-repository/</link>
		<comments>http://neurobot.bio.auth.gr/2010/neurodebian-the-debian-neuroscience-repository/#comments</comments>
		<pubDate>Wed, 29 Sep 2010 18:04:58 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[Software]]></category>
		<category><![CDATA[Stories]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=2441</guid>
		<description><![CDATA[NeuroDebian aims to provide a turnkey software platform for nearly all aspects of the neuroscientific research process. The Neurodebian repository provides mostly neuroscience-related packages to be used on Debian systems (or Debian-derivatives like Ubuntu). It contains both unofficial or prospective packages which are not (yet) available from the main Debian archive, as well as backported [...]]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2010/neurodebian-the-debian-neuroscience-repository/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>Time Encoding and Decoding (TED) Toolbox</title>
		<link>http://neurobot.bio.auth.gr/2009/time-encoding-and-decoding-ted-toolbox/</link>
		<comments>http://neurobot.bio.auth.gr/2009/time-encoding-and-decoding-ted-toolbox/#comments</comments>
		<pubDate>Mon, 20 Jul 2009 07:07:22 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[Software]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=2344</guid>
		<description><![CDATA[The Bionet Group at Columbia University has just released a Time Encoding and Decoding (TED) Toolbox for use by the research community. A gentle introduction to TED is available at http://www.bionet.ee.columbia.edu/code/ted.html The software release includes Matlab, Python and CUDA implementations of various encoding and decoding circuits/architectures and algorithms. Single-input single-output and single-input multi-output (population) encoders/decoders [...]]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2009/time-encoding-and-decoding-ted-toolbox/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>Artificial simulator of the human nervous system to do research into diseases and test new medicines</title>
		<link>http://neurobot.bio.auth.gr/2009/artificial-simulator-of-the-human-nervous-system-to-do-research-into-diseases-and-test-new-medicines/</link>
		<comments>http://neurobot.bio.auth.gr/2009/artificial-simulator-of-the-human-nervous-system-to-do-research-into-diseases-and-test-new-medicines/#comments</comments>
		<pubDate>Fri, 22 May 2009 08:21:26 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[External announcements]]></category>
		<category><![CDATA[Software]]></category>
		<category><![CDATA[Brain Research]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=2322</guid>
		<description><![CDATA[Scientists of the University of Granada have generated a computer which permits to reproduce any part of the body’s nervous system, such as the retina, the cerebellum, the hearing centres or the nervous centres This is free and open software, so-called EDLUT, which can be freely downloaded through the Internet. Originally posted at UGR news [...]]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2009/artificial-simulator-of-the-human-nervous-system-to-do-research-into-diseases-and-test-new-medicines/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>SigTool: A MATLAB-based environment for sharing laboratory-developed software to analyze biological signals</title>
		<link>http://neurobot.bio.auth.gr/2009/sigtool-a-matlab-based-environment-for-sharing-laboratory-developed-software-to-analyze-biological-signals/</link>
		<comments>http://neurobot.bio.auth.gr/2009/sigtool-a-matlab-based-environment-for-sharing-laboratory-developed-software-to-analyze-biological-signals/#comments</comments>
		<pubDate>Sat, 16 May 2009 21:38:25 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[Software]]></category>
		<category><![CDATA[Clustering]]></category>
		<category><![CDATA[Dimensionality Reduction]]></category>
		<category><![CDATA[Spike Sorting]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=2316</guid>
		<description><![CDATA[Developed to run within MATLAB, sigTOOL provides a programming and analysis environment for processing neuroscience data. A graphical-user interface to this environment provides the end-user with a self-contained application for waveform and spike-train analysis. User-written extensions to this application can be added to the interface on-the-fly without the need to modify any of the existing [...]]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2009/sigtool-a-matlab-based-environment-for-sharing-laboratory-developed-software-to-analyze-biological-signals/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>ButIf Toolbox</title>
		<link>http://neurobot.bio.auth.gr/2009/butif-toolbox/</link>
		<comments>http://neurobot.bio.auth.gr/2009/butif-toolbox/#comments</comments>
		<pubDate>Thu, 14 May 2009 09:30:03 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[Software]]></category>
		<category><![CDATA[Brain Research]]></category>
		<category><![CDATA[Wavelets]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=2314</guid>
		<description><![CDATA[BUTIFtoolbox is used to extract transient oscillatory dynamics from signals. Until now, it was succesfully applied to LFP (Local Field Potentials) and EEG (Electroencephalographic) signals. Applications to other fields could be researched.]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2009/butif-toolbox/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>NeuroConstruct</title>
		<link>http://neurobot.bio.auth.gr/2009/neuroconstruct/</link>
		<comments>http://neurobot.bio.auth.gr/2009/neuroconstruct/#comments</comments>
		<pubDate>Wed, 04 Mar 2009 08:46:48 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[Software]]></category>
		<category><![CDATA[Neural Networks]]></category>
		<category><![CDATA[Neurophysiology]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=2286</guid>
		<description><![CDATA[NeuroConstruct is a software for developing biologically realistic 3D neural network. It has been developed in the Silver Lab in the Department of Physiology at UCL. NeuroConstruct has been designed to simplify development of complex networks of biologically realistic neurons, i.e. models incorporating dendritic morphologies and realistic cell membrane conductances. It is implemented in Java [...]]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2009/neuroconstruct/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>C++ library allows large scale neuronal network simulators to exchange data during runtime</title>
		<link>http://neurobot.bio.auth.gr/2009/c-library-allows-large-scale-neuronal-network-simulators-to-exchange-data-during-runtime/</link>
		<comments>http://neurobot.bio.auth.gr/2009/c-library-allows-large-scale-neuronal-network-simulators-to-exchange-data-during-runtime/#comments</comments>
		<pubDate>Wed, 04 Mar 2009 08:41:23 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[Software]]></category>
		<category><![CDATA[Neural Networks]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=2285</guid>
		<description><![CDATA[MUSIC allows spike events and continuous time series to be communicated between applications in a cluster computer. The typical usage cases are connecting models developed for different simulators and connecting a parallel simulator to a post-processing tool. You may find more information here]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2009/c-library-allows-large-scale-neuronal-network-simulators-to-exchange-data-during-runtime/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>Multivariate Pattern Analysis in Python</title>
		<link>http://neurobot.bio.auth.gr/2009/multivariate-pattern-analysis-in-python/</link>
		<comments>http://neurobot.bio.auth.gr/2009/multivariate-pattern-analysis-in-python/#comments</comments>
		<pubDate>Thu, 26 Feb 2009 08:01:27 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[Software]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=2283</guid>
		<description><![CDATA[PyMVPA is a Python module intended to ease multivariate pattern classification analyses of large datasets. In the neuroimaging contexts such analysis techniques are also known as decoding or MVPA analysis. http://www.pymvpa.org PyMVPA: * provides high-level abstraction of typical processing steps and a number of implementations of some popular statistical learning algorithms, such as - classifiers: [...]]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2009/multivariate-pattern-analysis-in-python/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>NeuroML</title>
		<link>http://neurobot.bio.auth.gr/2009/neuroml/</link>
		<comments>http://neurobot.bio.auth.gr/2009/neuroml/#comments</comments>
		<pubDate>Tue, 20 Jan 2009 10:17:07 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[Software]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=2273</guid>
		<description><![CDATA[A simulator-independent language for describing biologically detailed neuronal and network models. NeuroML is a model description language which allows specification of components of biologically detailed neuronal models at many levels (e.g. ion channels, synaptic mechanisms, cells, networks). Examples of NeuroML files specifying each of these are available on the website. There are currently mappings available [...]]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2009/neuroml/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>An enhanced version of nev2lkit: precompiled binaries available</title>
		<link>http://neurobot.bio.auth.gr/2009/an-enhanced-version-of-nev2lkit-precompiled-binaries-available/</link>
		<comments>http://neurobot.bio.auth.gr/2009/an-enhanced-version-of-nev2lkit-precompiled-binaries-available/#comments</comments>
		<pubDate>Mon, 19 Jan 2009 19:26:18 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[Software]]></category>
		<category><![CDATA[Spike Sorting]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=2272</guid>
		<description><![CDATA[Precompiled binaries are available for the following platforms: o Mac OS X version 10.5 “Leopard” (Packed with Qt &#038; Qwt libraries) o Linux Ubuntu (x86) version 8.10 (Qt &#038; Qwt packed seperately as an option) Binaries are available for download in nev2lkit&#8217;s enhanced version project page. Win32 binaries are not provided due to lack of [...]]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2009/an-enhanced-version-of-nev2lkit-precompiled-binaries-available/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>Multiscale Object-Oriented Simulation Environment</title>
		<link>http://neurobot.bio.auth.gr/2008/multiscale-object-oriented-simulation-environment/</link>
		<comments>http://neurobot.bio.auth.gr/2008/multiscale-object-oriented-simulation-environment/#comments</comments>
		<pubDate>Sat, 18 Oct 2008 06:31:14 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[Software]]></category>
		<category><![CDATA[Neural Networks]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=2245</guid>
		<description><![CDATA[MOOSE is the Multiscale Object-Oriented Simulation Environment. It is the base and numerical core for large, detailed simulations including Computational Neuroscience and Systems Biology. It is substantially backward compatible with GENESIS, and has scripting in the GENESIS script language and in Python. MOOSE spans the range from single molecules to subcellular networks, from single cells [...]]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2008/multiscale-object-oriented-simulation-environment/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>NeuroMAX Toolbox</title>
		<link>http://neurobot.bio.auth.gr/2008/neuromax-toolbox/</link>
		<comments>http://neurobot.bio.auth.gr/2008/neuromax-toolbox/#comments</comments>
		<pubDate>Fri, 03 Oct 2008 06:48:58 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[Software]]></category>
		<category><![CDATA[Spike Sorting]]></category>
		<category><![CDATA[Statistical Analysis]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=2238</guid>
		<description><![CDATA[NeuroMAX is a MATLAB-based software toolbox for the analysis of spike train data. NeuroMAX creates a chain of powerful analysis tools that meet your specific research goals. This tool chain, or Workspace, can be any combination of packaged NeuroMAX tools and your own custom MATLAB-based tools. NeuroMAX tools are grouped into four toolboxes: Spike Detection, [...]]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2008/neuromax-toolbox/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>HHSim, a Hodgkin-Huxley graphical simulator</title>
		<link>http://neurobot.bio.auth.gr/2008/hhsim-a-hodgkin-huxley-graphical-simulator/</link>
		<comments>http://neurobot.bio.auth.gr/2008/hhsim-a-hodgkin-huxley-graphical-simulator/#comments</comments>
		<pubDate>Sat, 30 Aug 2008 06:57:23 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[Software]]></category>
		<category><![CDATA[Neurophysiology]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=2226</guid>
		<description><![CDATA[HHsim is a graphical simulation of a section of excitable neuronal membrane using the Hodgkin-Huxley equations. It provides full access to the Hodgkin-Huxley parameters, membrane parameters, stimulus parameters, and ion concentrations. In contrast with NEURON or GENESIS, which are vastly more sophisticated research tools, HHsim is simple educational software designed specifically for graduate or undergraduate [...]]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2008/hhsim-a-hodgkin-huxley-graphical-simulator/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>ICNF Software Center</title>
		<link>http://neurobot.bio.auth.gr/2008/icnf-software-center/</link>
		<comments>http://neurobot.bio.auth.gr/2008/icnf-software-center/#comments</comments>
		<pubDate>Thu, 21 Aug 2008 07:42:05 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[Software]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=2222</guid>
		<description><![CDATA[The International Neuroinformatics Coordinating Facility Software Center is still under development. The development team has to date focused on implemention of basic functionality, to allow neuroscience software users to efficiently and effectively find, evaluate, and successfully make use of shared software tools. INCF’s vision of the Software Center is that it will become a communication [...]]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2008/icnf-software-center/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>Neural Ensemble Project</title>
		<link>http://neurobot.bio.auth.gr/2008/neural-ensemble-project/</link>
		<comments>http://neurobot.bio.auth.gr/2008/neural-ensemble-project/#comments</comments>
		<pubDate>Thu, 21 Aug 2008 07:30:28 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[Software]]></category>
		<category><![CDATA[Neural Networks]]></category>
		<category><![CDATA[Neurophysiology]]></category>
		<category><![CDATA[Statistical Analysis]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=2221</guid>
		<description><![CDATA[NeuralEnsemble is a multilateral effort to coordinate and organise Neuroscience software development efforts into a larger meta-simulator software system, a natural and alternate approach to incrementally address what is known as the complexity bottleneck, presently a major roadblock for neural modelling. NeuralEnsemble hosts Trac/Subversion servers for a number of open-source neuroscience tools: PyNN a Python [...]]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2008/neural-ensemble-project/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>FIND toolbox &#8211; Finding Information in Neural Data</title>
		<link>http://neurobot.bio.auth.gr/2008/find-toolbox-finding-information-in-neural-data/</link>
		<comments>http://neurobot.bio.auth.gr/2008/find-toolbox-finding-information-in-neural-data/#comments</comments>
		<pubDate>Thu, 21 Aug 2008 07:17:44 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[Software]]></category>
		<category><![CDATA[Clustering]]></category>
		<category><![CDATA[Spike Sorting]]></category>
		<category><![CDATA[Statistical Analysis]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=2220</guid>
		<description><![CDATA[A Matlab-based, open-source analysis toolbox for multiple-neuron recordings and network simulations. Currently the FIND-Toolbox accommodates import of multiple proprietary data formats, based on the Neuroshare Project . Physiological data from different acquisition systems and Network simulations Environments can now be compared using identical analysis methods. This allows verifying of both results across experiments and laboratories [...]]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2008/find-toolbox-finding-information-in-neural-data/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>ModelDB</title>
		<link>http://neurobot.bio.auth.gr/2008/modeldb/</link>
		<comments>http://neurobot.bio.auth.gr/2008/modeldb/#comments</comments>
		<pubDate>Tue, 19 Aug 2008 09:30:01 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[Software]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=2219</guid>
		<description><![CDATA[ModelDB is a searchable on-line database that supports the field of computational neuroscience (CNS) through convenient sharing of published models. It catalyzes advances in CNS by enabling verification of published models&#8211;which is essential for scientific reproducibility&#8211;and fostering attributed re-use and extension of models. ModelDB http://senselab.med.yale.edu/modeldb/ contains 367 models, implemented with more than 30 different programming [...]]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2008/modeldb/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>Comparison of Neural Network Simulators</title>
		<link>http://neurobot.bio.auth.gr/2008/comparison-of-neural-network-simulators/</link>
		<comments>http://neurobot.bio.auth.gr/2008/comparison-of-neural-network-simulators/#comments</comments>
		<pubDate>Sat, 09 Aug 2008 11:07:09 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[Software]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=2218</guid>
		<description><![CDATA[A comparison of neural network simulation enviroments has been posted. It is a new GFDL-licensed project to document a variety of modern neural simulators along a number of useful dimensions. Visit the project&#8217;s page here: http://grey.colorado.edu/emergent/index.php/Comparison_of_Neural_Network_Simulators]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2008/comparison-of-neural-network-simulators/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>Brian: a pure Python neural simulator</title>
		<link>http://neurobot.bio.auth.gr/2008/brian-a-pure-python-neural-simulator/</link>
		<comments>http://neurobot.bio.auth.gr/2008/brian-a-pure-python-neural-simulator/#comments</comments>
		<pubDate>Thu, 08 May 2008 09:57:51 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[Software]]></category>
		<category><![CDATA[Neural Networks]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=2176</guid>
		<description><![CDATA[Brian is a new simulator for spiking neural networks available on almost all platforms. The motivation for this project is that a simulator should not only save the time of processors, but also the time of scientists. Brian is easy to learn and use, highly flexible and easily extensible. http://brian.di.ens.fr The Brian package itself and [...]]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2008/brian-a-pure-python-neural-simulator/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>New datasharing website for computational neuroscience</title>
		<link>http://neurobot.bio.auth.gr/2008/new-datasharing-website-for-computational-neuroscience/</link>
		<comments>http://neurobot.bio.auth.gr/2008/new-datasharing-website-for-computational-neuroscience/#comments</comments>
		<pubDate>Fri, 04 Apr 2008 12:32:22 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[Software]]></category>
		<category><![CDATA[Tutorials]]></category>
		<category><![CDATA[Neurophysiology]]></category>
		<category><![CDATA[Statistical Analysis]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=2167</guid>
		<description><![CDATA[The new website http://www.crcns.org is available for sharing resources for computational neuroscience, such as high-quality experimental data sets, analytical tools and models. Currently, the website hosts resources whose preparation have been supported by a new funding track in the joint NSF/NIH program Collaborative Research in Computational Neuroscience. http://www.nsf.gov/funding/pgm_summ.jsp?pims_id=5147 The resources currently available are electrophysiology data [...]]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2008/new-datasharing-website-for-computational-neuroscience/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>Chronux Analysis Software</title>
		<link>http://neurobot.bio.auth.gr/2008/chronux-analysis-software/</link>
		<comments>http://neurobot.bio.auth.gr/2008/chronux-analysis-software/#comments</comments>
		<pubDate>Fri, 07 Mar 2008 11:27:11 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[Software]]></category>
		<category><![CDATA[Statistical Analysis]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=2156</guid>
		<description><![CDATA[Chronux is an open-source software package being developed for the analysis of neural data. It is a collaborative research effort based at the Mitra Lab in Cold Spring Harbor Laboratory that has grown out of the work of several groups. Chronux routines may be employed in the analysis of both point process and continuous data, [...]]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2008/chronux-analysis-software/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>Spike train analysis toolkit</title>
		<link>http://neurobot.bio.auth.gr/2008/spike-train-analysis-toolkit/</link>
		<comments>http://neurobot.bio.auth.gr/2008/spike-train-analysis-toolkit/#comments</comments>
		<pubDate>Thu, 28 Feb 2008 14:22:33 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[Software]]></category>
		<category><![CDATA[Information Theory]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=2155</guid>
		<description><![CDATA[Information theoretic methods are now widely used for the analysis of spike train data. However, developing robust implementations of these methods can be tedious and time-consuming. In order to facilitate further adoption of these methods, the Spike Train Analysis Toolkit implements several information-theoretic spike train analysis techniques. This implementation behaves like a typical Matlab toolbox, [...]]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2008/spike-train-analysis-toolkit/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>Emergent Neural Network Simulation Software (formerly PDP++)</title>
		<link>http://neurobot.bio.auth.gr/2007/emergent-neural-network-simulation-software-formerly-pdp/</link>
		<comments>http://neurobot.bio.auth.gr/2007/emergent-neural-network-simulation-software-formerly-pdp/#comments</comments>
		<pubDate>Thu, 06 Sep 2007 10:50:18 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[Software]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=2071</guid>
		<description><![CDATA[Emergent is a major rewrite of the widely used PDP++ system. The Emergent Neural Network Simulation System Emergent is a comprehensive simulation environment for creating complex, sophisticated models of the brain and cognitive processes using neural network models. These networks can also be used for all kinds of other more pragmatic tasks, like predicting the [...]]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2007/emergent-neural-network-simulation-software-formerly-pdp/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>IQR simulator for large scale neural systems</title>
		<link>http://neurobot.bio.auth.gr/2007/iqr-simulator-for-large-scale-neural-systems/</link>
		<comments>http://neurobot.bio.auth.gr/2007/iqr-simulator-for-large-scale-neural-systems/#comments</comments>
		<pubDate>Sat, 09 Jun 2007 07:42:26 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[Software]]></category>
		<category><![CDATA[Neural Networks]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=2042</guid>
		<description><![CDATA[IQR provides an efficient graphical environment to design large-scale multi-level neuronal systems that can control real-world devices &#8211; robots in the broader sense &#8211; in real-time. IQR has been released as open-source under GNU General Public License (GPL) IRQ is written by Ulysses Bernardet, Institute of Neuroinformatics University, ETH Zurich. Models in IRQ are organized [...]]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2007/iqr-simulator-for-large-scale-neural-systems/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>Learn Like A Human</title>
		<link>http://neurobot.bio.auth.gr/2007/learn-like-a-human/</link>
		<comments>http://neurobot.bio.auth.gr/2007/learn-like-a-human/#comments</comments>
		<pubDate>Fri, 11 May 2007 07:09:23 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[Software]]></category>
		<category><![CDATA[Stories]]></category>
		<category><![CDATA[Neural Networks]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=2037</guid>
		<description><![CDATA[Why Can&#8217;t A Computer Be More Like A Brain? &#8220;Computers, at long last, can play winning chess. But the program that can beat the world champion can&#8217;t talk about chess, let alone learn backgammon. Today&#8217;s programs-at best-solve specific problems. Where humans have broad and flexible capabilities, computers do not. &#8221; Source: IEEE Spectrum Magazine To [...]]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2007/learn-like-a-human/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>An Introduction to Wavelets</title>
		<link>http://neurobot.bio.auth.gr/2006/an-introduction-to-wavelets/</link>
		<comments>http://neurobot.bio.auth.gr/2006/an-introduction-to-wavelets/#comments</comments>
		<pubDate>Tue, 05 Sep 2006 16:27:50 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[Software]]></category>
		<category><![CDATA[Tutorials]]></category>
		<category><![CDATA[Wavelets]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=2015</guid>
		<description><![CDATA[&#8220;Wavelets are mathematical functions that cut up data into different frequency components, and then study each component with a resolution matched to its scale. They have advantages over traditional Fourier methods in analyzing physical situations where the signal contains discontinuities and sharp spikes.&#8221; This paper introduces wavelets to the interested technical person outside of the [...]]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2006/an-introduction-to-wavelets/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>Automatic spike detection and sorting using wavelets and super-paramagnetic clustering</title>
		<link>http://neurobot.bio.auth.gr/2006/automatic-spike-detection-and-sorting-using-wavelets-and-super-paramagnetic-clustering/</link>
		<comments>http://neurobot.bio.auth.gr/2006/automatic-spike-detection-and-sorting-using-wavelets-and-super-paramagnetic-clustering/#comments</comments>
		<pubDate>Wed, 02 Aug 2006 20:42:29 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[Software]]></category>
		<category><![CDATA[Clustering]]></category>
		<category><![CDATA[Spike Sorting]]></category>
		<category><![CDATA[Wavelets]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=2013</guid>
		<description><![CDATA[Wave_clus is a fast and unsupervised algorithm for spike detection and sorting. Although it gives a first unsupervised solution, this can be further modified according to the experimenter&#8217;s preference (semi-automatic sorting). By Rodrigo Quian Quiroga, Reader in Bioengineering, Dept. Engineering. University of Leicester, UK. The method combines the wavelet transform,which localizes distinctive spike features, with [...]]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2006/automatic-spike-detection-and-sorting-using-wavelets-and-super-paramagnetic-clustering/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>BrainML : a standard XML metaformat for exchanging neuroscience data</title>
		<link>http://neurobot.bio.auth.gr/2006/brainml-a-standard-xml-metaformat-for-exchanging-neuroscience-data/</link>
		<comments>http://neurobot.bio.auth.gr/2006/brainml-a-standard-xml-metaformat-for-exchanging-neuroscience-data/#comments</comments>
		<pubDate>Tue, 04 Jul 2006 22:07:53 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[Software]]></category>
		<category><![CDATA[Neurophysiology]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=2012</guid>
		<description><![CDATA[BrainML is a developing initiative to provide a standard XML metaformat for exchanging neuroscience data. It focuses on layered definitions built over a common core in order to support community-driven extension. One such extension is provided by the new NIH-supported neuroinformatics initiative of the Society for Neuroscience, which supports the development of expert-derived terminology sets [...]]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2006/brainml-a-standard-xml-metaformat-for-exchanging-neuroscience-data/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>Online Sorter &#8220;OSort&#8221; for spike sorting</title>
		<link>http://neurobot.bio.auth.gr/2006/online-sorter-osort-for-spike-sorting/</link>
		<comments>http://neurobot.bio.auth.gr/2006/online-sorter-osort-for-spike-sorting/#comments</comments>
		<pubDate>Mon, 12 Jun 2006 17:43:30 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[Software]]></category>
		<category><![CDATA[Spike Sorting]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=2010</guid>
		<description><![CDATA[&#8220;Offline spike sorting approaches are currently used to detect and sort action potentials after finishing the experiment. Because the opportunities to record from the human brain are relatively rare, it is desirable to analyze large numbers of simultaneous recordings quickly using online sorting and detection algorithms. In this way, the experiment can be optimized for [...]]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2006/online-sorter-osort-for-spike-sorting/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>Amygdala  open-source software for simulating spiking neural networks</title>
		<link>http://neurobot.bio.auth.gr/2005/amygdala-open-source-software-for-simulating-spiking-neural-networks/</link>
		<comments>http://neurobot.bio.auth.gr/2005/amygdala-open-source-software-for-simulating-spiking-neural-networks/#comments</comments>
		<pubDate>Fri, 29 Jul 2005 09:10:45 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[Software]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=1993</guid>
		<description><![CDATA[Amygdala is open-source software for simulating spiking neural networks (SNNs). Spiking neural networks are a very specific sort of &#8220;artificial brain&#8221; which has shown particular promise in recent scientific research. SNNs have very useful applications in artificial intelligence (AI) and pattern recognition. The goal of the Amygdala project is to use biologically accurate &#8220;spike coding&#8221; [...]]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2005/amygdala-open-source-software-for-simulating-spiking-neural-networks/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>Modular toolkit for Data Processing</title>
		<link>http://neurobot.bio.auth.gr/2005/modular-toolkit-for-data-processing/</link>
		<comments>http://neurobot.bio.auth.gr/2005/modular-toolkit-for-data-processing/#comments</comments>
		<pubDate>Wed, 06 Jul 2005 07:38:48 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[Software]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=1991</guid>
		<description><![CDATA[Modular toolkit for Data Processing (MDP) is a Python library to perform data processing. Already implemented algorithms include: Principal Component Analysis (PCA), Independent Component Analysis (ICA), Slow Feature Analysis (SFA), and Growing Neural Gas (GNG) MDP has been written for research in neuroscience, but it has been designed to be helpful in any context where [...]]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2005/modular-toolkit-for-data-processing/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>Meabench</title>
		<link>http://neurobot.bio.auth.gr/2005/meabench/</link>
		<comments>http://neurobot.bio.auth.gr/2005/meabench/#comments</comments>
		<pubDate>Mon, 04 Jul 2005 12:34:09 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[Software]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=1990</guid>
		<description><![CDATA[Meabench is a set of interacting linux programs for recording data from MEAs and real time processing. Meabench is a set of interacting linux programs for recording data from MEAs and real time processing. It can be used to acquire and visualize data from MultiChannel Systems multi-electrode array hardware in real time. On-line spike detection [...]]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2005/meabench/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>Data Analysis Network</title>
		<link>http://neurobot.bio.auth.gr/2005/data-analysis-network/</link>
		<comments>http://neurobot.bio.auth.gr/2005/data-analysis-network/#comments</comments>
		<pubDate>Fri, 10 Jun 2005 12:54:28 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[Software]]></category>
		<category><![CDATA[Statistical Analysis]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=1986</guid>
		<description><![CDATA[DAN is applied to gain better understanding of the neural foundation of information processing in the brain.The main idea of this project is to implement and to develop a new user-friendly software. A critical feature of brain theories is whether neurons convey a noisy rate code or a precise temporal code. One of most valuable [...]]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2005/data-analysis-network/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>Multivariate Data Analysis Software and Resources</title>
		<link>http://neurobot.bio.auth.gr/2005/multivariate-data-analysis-software-and-resources/</link>
		<comments>http://neurobot.bio.auth.gr/2005/multivariate-data-analysis-software-and-resources/#comments</comments>
		<pubDate>Tue, 07 Jun 2005 13:14:08 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[Software]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=1984</guid>
		<description><![CDATA[Multivariate Data Analysis Software and Resources Contents: 1 MDA-J: Multivariate Data Analysis &#8211; Java 2 Multivariate Data Analysis Software as Java Applications 3 Multivariate Data Analysis Software in Fortran (and C) 4 Multivariate Data Analysis Software in S-Plus/R (and Fortran),including hierarchical clustering with weights on cases (in R and C)and including hierarchical Haar wavelet transform [...]]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2005/multivariate-data-analysis-software-and-resources/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>KlustaKwik</title>
		<link>http://neurobot.bio.auth.gr/2005/klustakwik/</link>
		<comments>http://neurobot.bio.auth.gr/2005/klustakwik/#comments</comments>
		<pubDate>Tue, 07 Jun 2005 13:01:03 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[Software]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=1983</guid>
		<description><![CDATA[KlustaKwik is a program for unsupervised classification of multidimensional continuous data. It arose from a specific need &#8211; automatic sorting of neuronal action potential waveforms (see here), but works for any type of data. The program can: 1) Fit a mixture of Gaussians with unconstrained covariance matrices 2) Automatically choose the number of mixture components [...]]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2005/klustakwik/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>NeuroScope</title>
		<link>http://neurobot.bio.auth.gr/2005/neuroscope/</link>
		<comments>http://neurobot.bio.auth.gr/2005/neuroscope/#comments</comments>
		<pubDate>Mon, 06 Jun 2005 13:12:15 +0000</pubDate>
		<dc:creator>Dimitrios A. Adamos</dc:creator>
				<category><![CDATA[Software]]></category>

		<guid isPermaLink="false">http://neurobot.bio.auth.gr/?p=1982</guid>
		<description><![CDATA[NeuroScope is an advanced viewer for electrophysiological and behavioral data: it can display local field potentials (EEG), neuronal spikes, behavioral events, as well as the position of the animal in the environment. It also features limited editing capabilities. NeuroScope is developed by Lynn Hazan in G. BuzsÃ¡ki&#8217;s lab (CMBN, Rutgers Newark, USA). Visit NeuroScope&#8217;s Home [...]]]></description>
		<wfw:commentRss>http://neurobot.bio.auth.gr/2005/neuroscope/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
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