Package: fsl-5.0-doc-wiki Source: fsldata Version: 5.0.7-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 179727 Replaces: fsl-5.0-doc-wikiattachments Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-5.0-doc-wiki_5.0.7-2_all.deb Size: 175560016 SHA256: 0f1844cd59ae80bd30d3baaf6240f68cdbe6161079153bba74e292f2e02f63d2 SHA1: 2b91fc70dee67f0deef22ac115d835e70a23b243 MD5sum: 821c918cc58d2047af4d9c3b1586d661 Description: FSL documentation wiki This package is part of FSL and contains the FSL documentation wiki. Package: fsl-5.0-doc-wikiattachments Source: fsldata Version: 5.0.5-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 175304 Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-5.0-doc-wikiattachments_5.0.5-1_all.deb Size: 174610500 SHA256: 86e162830c3c5f3b546223c93b9a45c6dc4856d068dda05ab65a9896a74edce2 SHA1: e91c31ef761813a8844cb1136330422f00b1fccb MD5sum: cfca132fe7a89bfa102045943ed6b2a8 Description: attachments for the FSL documentation wiki This package is part of FSL and contains the file attachments of the FSL documentation wiki. Package: fsl-atlases Source: fsldata Version: 5.0.7-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 13 Depends: fsl-harvard-oxford-atlases, fsl-juelich-histological-atlas, fsl-jhu-dti-whitematter-atlas, fsl-mni-structural-atlas, fsl-talairach-daemon-atlas, fsl-oxford-thalamic-connectivity-atlas, fsl-bangor-cerebellar-atlas, fsl-mni152-templates, fsl-oxford-striatal-atlas, fsl-subthalamic-nucleus-atlas, fsl-resting-connectivity-parcellation-atlases Replaces: fsl-data Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-atlases_5.0.7-2_all.deb Size: 4618 SHA256: 6dc3067092572b42d11b43cbb7318a0c9c50e400f727bb024f89a52a7b833ed7 SHA1: 3ca316bf312342e1a3346b3863d6b4d26b8ac517 MD5sum: f2cc86a69091f51faf4a701f5f42d999 Description: FSL's MNI152 standard space stereotaxic brain atlases This meta-package installs all stereotaxic atlases that are shipped with FSL. Package: fsl-bangor-cerebellar-atlas Source: fsldata Version: 5.0.7-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 1811 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-bangor-cerebellar-atlas_5.0.7-2_all.deb Size: 1307588 SHA256: fad71fd734674ff57d0dfb28e7c5fc38b42491a559d3b579b1301f64a1f73acf SHA1: 83a007283696ca49776dcb3bad46e6bc65e28e2a MD5sum: 13f35a757e0dc9d27c5782874501b90f Description: probabilistic atlas of the human cerebellum This is a probabilistic atlas of the cerebellar lobules in the anatomical space defined by the MNI152 template. Lobules were masked separately on T1-weighted MRI scans (1 mm isotropic resolution) of 20 healthy young participants (10 male, 10 female, average age 23.7 yrs). These cerebella were then aligned to the standard or non-linear version of the whole-brain MNI152 template using a number of commonly used normalization algorithms, or to a previously published cerebellum-only template (Diedrichsen, J., 2006. A spatially unbiased atlas template of the human cerebellum. NeuroImage 33, 127-138). . This package is part of FSL. Package: fsl-feeds Version: 5.0.4-1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 280425 Depends: fsl-5.0-core | fsl-5.0 | fsl, dc, tcl8.4 | tclsh, debianutils (>= 1.7), fsl-atlases (>= 4.1) Recommends: fsl-first-data (>= 4.1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsl-feeds/fsl-feeds_5.0.4-1_all.deb Size: 283574452 SHA256: ec972111056296aaf559bf2ba480e47cad1cc8d02771c781d612dee641cb22bf SHA1: d773329c3703d1ceee8115ce70543e4a249a9fbc MD5sum: b3afe6c5cd8e9ac2ce8c3d53f2f22ce2 Description: FSL Evaluation and Example Data Suite FSL is a comprehensive library of image analysis and statistical tools for FMRI, MRI and DTI brain imaging data. . This package provides the 'fsl-selftest' tool, that can be used to test whether FSL is working properly. Additionally the included example data might be useful when doing the first steps with FSL. . The datasets include both example input and example output data. Package: fsl-first-data Source: fsldata Version: 5.0.7-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 1132686 Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-first-data_5.0.7-2_all.deb Size: 1067065342 SHA256: 4079dbe1f916bcc278721047eef19b2c120a654fa63c05c042f9726f817a9af6 SHA1: a785236ddb669c06c167343701529e31b9fdc358 MD5sum: 3dfc2414dc5c8efa1d67d815fac55c76 Description: model data for FIRST subcortical brain segmentation This package is part of FSL. Package: fsl-harvard-oxford-atlases Source: fsldata Version: 5.0.7-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 21493 Recommends: fsl-harvard-oxford-cortical-lateralized-atlas Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-harvard-oxford-atlases_5.0.7-2_all.deb Size: 20754740 SHA256: 235a9be15b8061caf2ab9caaaab41ffacaf025232b0507259f660218a01249b4 SHA1: 913a57112739aabd52267da255b1d1bddf186682 MD5sum: 8f97096eb7e579d04f2dad9bcaa65acd Description: probabilistic atlas of human cortical brain areas (lateralized) Probabilistic atlases covering 48 cortical and 21 subcortical structural areas, derived from structural data and segmentations kindly provided by the Harvard Center for Morphometric Analysis. . T1-weighted images of 21 healthy male and 16 healthy female subjects (ages 18-50) were individually segmented using semi-automated tools developed in-house. The T1-weighted images were affine-registered to MNI152 space using FLIRT (FSL), and the transforms then applied to the individual labels. Finally, these were combined across subjects to form population probability maps for each label. . This package is part of FSL. Package: fsl-harvard-oxford-cortical-lateralized-atlas Source: fsldata Version: 5.0.7-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 8155 Depends: fsl-harvard-oxford-atlases Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-harvard-oxford-cortical-lateralized-atlas_5.0.7-2_all.deb Size: 4925684 SHA256: a7c63c121878b7cb1696eb38a90df64bff019d14b5b490701b477c62bd78be51 SHA1: a7e3b93d8886b67552838ce91dfc0a32819e1aa1 MD5sum: 1ad174448ef36a17e34821b5b0575835 Description: probabilistic atlas of human cortical and subcortical brain areas Probabilistic atlases covering 48 cortical and 21 subcortical structural areas, derived from structural data and segmentations kindly provided by the Harvard Center for Morphometric Analysis. . T1-weighted images of 21 healthy male and 16 healthy female subjects (ages 18-50) were individually segmented using semi-automated tools developed in-house. The T1-weighted images were affine-registered to MNI152 space using FLIRT (FSL), and the transforms then applied to the individual labels. Finally, these were combined across subjects to form population probability maps for each label. . This atlas is derived from the official FSL's cortical atlas where laterality probability is taken from the subcortical atlas. . This package is not a part of official FSL distribution. Package: fsl-jhu-dti-whitematter-atlas Source: fsldata Version: 5.0.7-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 13590 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-jhu-dti-whitematter-atlas_5.0.7-2_all.deb Size: 13674500 SHA256: f48fa7270aaa5b97b398de815b621deb2312788f9fc1f08f895dacc308e59ffd SHA1: e0a8231126e664a9eaa16af34649ab47b46226b3 MD5sum: c967f60e9e5fe7c62ea831a5de5be236 Description: human brain white-matter atlas There are two white-matter atlases, both kindly provided by Dr. Susumu Mori, Laboratory of Brain Anatomical MRI, Johns Hopkins University. . In the ICBM-DTI-81 white-matter labels atlas, 50 white matter tract labels were created by hand segmentation of a standard-space average of diffusion MRI tensor maps from 81 subjects; mean age 39 (18:59), M:42, F: 39. The diffusion data was kindly provided by the ICBM DTI workgroup. . In the JHU white-matter tractography atlas, 20 structures were identified probabilistically by averaging the results of running deterministic tractography on 28 normal subjects (mean age 29, M:17, F:11). . This package is part of FSL. Package: fsl-juelich-histological-atlas Source: fsldata Version: 5.0.7-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 4664 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-juelich-histological-atlas_5.0.7-2_all.deb Size: 3711806 SHA256: 1532205cd544e80f34b5d976a789c3208f71a7caf2cbcac6b123f29c79a1075f SHA1: 195d4ca013663147934e899a7b340d7d32e20ac0 MD5sum: 268dfe8c21755a34d6440c52889b8416 Description: brain atlas based on cyto- and myelo-architectonic segmentations A probabilistic atlas created by averaging multi-subject post-mortem cyto- and myelo-architectonic segmentations, performed by the team of Profs Zilles and Amunts at the Research Center Jülich and kindly provided by Simon Eickhoff. . The atlas contains 32 grey matter structures and 10 white matter structures. This is the same data as used in Eickhoff's Anatomy Toolbox v1.5. The atlas is based on the microscopic and quantitative histological examination of ten human post-mortem brains. The histological volumes of these brains were 3D reconstructed and spatially normalised into the space of the MNI single subject template to create a probabilistic map of each area. For the FSL version of this atlas, these probabilistic maps were then linearly transformed into MNI152 space. . This package is part of FSL. Package: fsl-mni-structural-atlas Source: fsldata Version: 5.0.7-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 2701 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-mni-structural-atlas_5.0.7-2_all.deb Size: 2610166 SHA256: 0ba1d7692b3af47e9dfa87d6af98b91660b7a1cd9d040d2f4d438b955b63cea5 SHA1: f1ac7a6cc2346da0890cfb30ae390f71eb4cb1e0 MD5sum: e08b5256a35462d0607afe241b622b26 Description: hand-segmented single-subject human brain atlas 9 anatomical structural regions, kindly provided by Jack Lancaster at the Research Imaging Center, UTHSCSA, Texas (originally from the McConnell Brain Imaging Centre, MNI). . A single subject's structural image was hand segmented, and the labels were then propagated to more than 50 subjects' structural images using nonlinear registration. Each resulting labelled brain was then transformed into MNI152 space using affine registration, before averaging segmentations across subjects to produce the final probability images. . This package is part of FSL. Package: fsl-mni152-templates Source: fsldata Version: 5.0.7-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 56558 Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-mni152-templates_5.0.7-2_all.deb Size: 54629314 SHA256: 8c046964acbdfad79b97bd979d8164148454f316b977c90cd093e92e5d4ec4dc SHA1: 025206256f25fb76f479127de2f8667749fdcfef MD5sum: 880704cb34208a0d6bcc91605e2e0cb8 Description: MNI152 stereotaxic brain templates for FSL This package is part of FSL. Package: fsl-oxford-striatal-atlas Source: fsldata Version: 5.0.7-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 904 Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-oxford-striatal-atlas_5.0.7-2_all.deb Size: 301636 SHA256: 048949f0752a88d6c599eb8cb8a48e273c952d2444633bc9ed342d7fdca7a2ef SHA1: 5e28d4d6b01cef069c98c0b1f4dfe9389fefed72 MD5sum: 8a0c23b90e23c03a34facec580a89e46 Description: probabilistic atlas of the human brain's sub-striatal regions This package provide both a structural and a connectivity atlas of the human striatum. For the latter, sub-striatal regions are segmented according to their white-matter connectivity to cortical areas. This connectivity atlas reports anatomical connection from points in the striatum to each of 7 cortical zones obtained using probabilistic diffusion tractography in multiple subjects. . In the structural atlas sub-striatal regions are segmented according to the anatomical structure. Striatum is divided into caudate, putamen and ventral striatum according to the guidelines described by Tziortzi et al., NeuroImage 54: 264-77. The sub-regions were manually delineated on the non-linear MNI152 template. . This package is part of FSL. Package: fsl-oxford-thalamic-connectivity-atlas Source: fsldata Version: 5.0.7-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 313 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-oxford-thalamic-connectivity-atlas_5.0.7-2_all.deb Size: 220630 SHA256: 426ae89472907ee7fb6fced2a7570cfd28c4b7fb421ecff418cbea3bf3e8e49c SHA1: bfed1685a95285ab66259e9d4c9f9f759f77fe5a MD5sum: ae61838324b2b431590aa2e93ec6ed99 Description: probabilistic brain atlas of thalamic white-matter connectivity A probabilistic atlas of 7 sub-thalamic regions, segmented according to their white-matter connectivity to cortical areas, kindly provided by Heidi Johansen-Berg and Timothy Behrens, FMRIB. . This connectivity atlas reports probability of anatomical connection from points in the thalamus to each of 7 cortical zones. These probabilities are calculated using probabilistic diffusion tractography in multiple subjects. . This package is part of FSL. Package: fsl-possum-data Source: fsldata Version: 5.0.7-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 41251 Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-possum-data_5.0.7-2_all.deb Size: 41309018 SHA256: 3d6a8e7408281e5d0e8ac000af6fc4555a277f04905a902070933d9be248afb0 SHA1: 00bc4e7a658e0ec76836dc8081619ad8d6350a16 MD5sum: 3dd03bcbc0010be6fcb4cc1fd106c3eb Description: sequence templates for the POSSUM MRI-simulator This package is part of FSL. Package: fsl-resting-connectivity-parcellation-atlases Source: fsldata Version: 5.0.7-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 2261 Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-resting-connectivity-parcellation-atlases_5.0.7-2_all.deb Size: 1077108 SHA256: 1e25a0f87391f54344466934bbb5a1725335d8e58c167f6da2b12511adac43a1 SHA1: 65e61dcea3cde03497dec5804f5be538bab92627 MD5sum: 01867d6030163bcd1290859182bea24b Description: brain parcellations based on resting state connectivity A collection of parcellations based on resting-state functional connectivity as measured with fMRI. Four parcellations of particular cortical regions are available: . * Parietal cortex Mars et al. (2011). Diffusion-Weighted Imaging Tractography-Based Parcellation of the Human Parietal Cortex and Comparison with Human and Macaque Resting-State Functional Connectivity. The Journal of Neuroscience, 31, 4087-4100. * Temporoparietal junction area (TPJ) Mars et al. (2012). Connectivity-Based Subdivisions of the Human Right "Temporoparietal Junction Area": Evidence for Different Areas Participating in Different Cortical Networks. Cerebral Cortex, 22, 1894-1903. * Dorsal Frontal Cortex Sallet et al. (2013). The Organization of Dorsal Frontal Cortex in Humans and Macaques. The Journal of Neuroscience, 33, 12255-12274. * Ventral Frontal Cortex Neubert et al. (2014). Comparison of Human Ventral Frontal Cortex Areas for Cognitive Control and Language with Areas in Monkey Frontal Cortex, Neuron, 81, 700-713. . This package is part of FSL. Package: fsl-subthalamic-nucleus-atlas Source: fsldata Version: 5.0.7-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 1137 Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-subthalamic-nucleus-atlas_5.0.7-2_all.deb Size: 25312 SHA256: 25cee7dd52fccff169564fe7b6fb36c8b6d2ff41467a602bd3e2ba7a49e0fca4 SHA1: 5fefdd53bf555d79dc5b19c441c673fb06385408 MD5sum: 604448c72c777834c062871683c44a95 Description: probabilistic subthalamic nucleus atlas This atlas takes advantage of the ultra-high resolution possible in 7T MRI to provide unprecedented levels of detail on structures of the basal ganglia in vivo. The atlas includes (so far) probability maps of the right and left Subthalamic Nucleus (STN) using T2*-imaging. For now it has been created on 13 young healthy participants (6 female) with a mean age of 24.38 (range: 22-28, standard deviation: 2.36). More details are available in . B.U. Forstmann, Keuken, M. C., Jahfari, S., Bazin, P.-L., Neumann, J., Schaefer, A., Anwander, A., & Turner, R. (2012). Cortico-subthalamic white matter tract strength predict interindividual efficacy in stopping a motor response. NeuroImage, 60, 370-375. . This package is part of FSL. Package: fsl-talairach-daemon-atlas Source: fsldata Version: 5.0.7-2 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 621 Conflicts: fsl-atlases (<= 4.1.6-1) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: extra Section: non-free/science Filename: pool/non-free/f/fsldata/fsl-talairach-daemon-atlas_5.0.7-2_all.deb Size: 451282 SHA256: 5e43ebd544e2bff60774013d4519be02c762322bc4d70a10293db565ef6cbf24 SHA1: ae58a0c7427bc08ab7dc84ff1c45e1030484fdcb MD5sum: 7d1a34a6fe43e1c89a95db8b80bba4aa Description: structural anatomy labels of the Talairach atlas A conversion of the original Talairach structural labellings, kindly provided by Jack Lancaster and Diana Tordesillas Gutiérrez at the Research Imaging Center, UTHSCSA, Texas. . This is a digitised version of the original (coarsely sliced) Talairach atlas (Lancaster 2000) after the application of a correcting affine transform (Lancaster 2007) to register it into MNI152 space. . This package is part of FSL.