Package: fsl Version: 5.0.9-5~nd90+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 39 Depends: fsl-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl_5.0.9-5~nd90+1_all.deb Size: 21660 SHA256: bee71960f3c75a8fecbf6f61c9a20febe737301bc309809639572d84860714a7 SHA1: 879b3e2010883ba2b096bd266a8119cd57a5e422 MD5sum: 9fade717f2b8fbf91a7c9fc5210244fe Description: transitional dummy package The only purpose of this package is to enable upgrades to the new 'fsl-core' package which replaces 'fsl'. This package can safely be removed. . Users aiming to perform a complete FSL installation (including all data components) are advised to install the 'fsl-complete' package from NeuroDebian. Package: fsl-5.0 Source: fsl Version: 5.0.9-5~nd90+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 35 Depends: fsl-5.0-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl-5.0_5.0.9-5~nd90+1_all.deb Size: 20246 SHA256: 209fa406930eb6176176f17324307165014dd8dd30de7218438557602cb26d53 SHA1: 82d512a5e290c897394131730aeabd16b974671d MD5sum: b11d019edb862757978af2bd6060f175 Description: transitional dummy package The only purpose of this package is to enable upgrades to the new 'fsl-5.0-core' package which replaces 'fsl-5.0'. This package can safely be removed. . Users aiming to perform a complete FSL 5.0 installation (including all data components) are advised to install the 'fsl-5.0-complete' package from NeuroDebian. Package: fsl-5.0-core Source: fsl Version: 5.0.9-5~nd90+1 Architecture: i386 Maintainer: NeuroDebian Team Installed-Size: 39929 Depends: mozilla-firefox | www-browser, tcsh | c-shell, tk, tcl, bc, dc, python, libjs-excanvas, libc6 (>= 2.11), libexpat1 (>= 2.0.1), libgcc1 (>= 1:4.2), libgd3 (>= 2.1.0~alpha~), libgdchart-gd2-noxpm | libgdchart-gd2-xpm, libgiftiio0, libgl1-mesa-glx | libgl1, libglu1-mesa | libglu1, libnewmat10ldbl, libnifti2, libpng16-16 (>= 1.6.2-1), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4) Recommends: fsl-atlases, fsl-5.0-eddy-nonfree, fslview Suggests: fsl-feeds, fsl-5.0-gpu, octave, mriconvert | dicomnifti, fsl-complete, condor | gridengine-client Conflicts: fsl-doc-4.1 (<< 4.1.9-5~), fsl-fslview Breaks: fsl-5.0 (<< 5.0.3) Replaces: fsl-5.0 (<< 5.0.3) Provides: fsl Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-5.0-core_5.0.9-5~nd90+1_i386.deb Size: 8423562 SHA256: bd6b24739c1100f194f719a014ac24a59889985a0cd6b1edf8309477d8dbc580 SHA1: 60a0d72893bc07990d486e43b1ec869b0e302b98 MD5sum: c36097f38589b6a247719214bc1d103d Description: analysis tools for FMRI, MRI and DTI brain imaging FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. . Users aiming to perform a complete FSL 5.0 installation (including all data components) are advised to install the 'fsl-5.0-complete' package from NeuroDebian. . FSL interoperates well with other brain imaging related software. This includes Caret, FreeSurfer (cortical flattening and modelling). All FSL tools support the NIfTI format. 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ff202e21b294497f2d9633442f7893be50855b5e ff3288db1d10959664281a83f4fb2904c6594c18 Package: fsl-5.0-eddy-nonfree Source: fsl-eddy-nonfree Version: 5.0.9-1~nd90+1 Architecture: i386 Maintainer: NeuroDebian Team Installed-Size: 803 Depends: neurodebian-popularity-contest, fsl-5.0-core (>= 5.0.9-1~), libc6 (>= 2.4), libgcc1 (>= 1:3.0), libnewmat10ldbl, libstdc++6 (>= 5.2) Conflicts: fsl-5.0-core (<< 5.0.9) Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl-eddy-nonfree/fsl-5.0-eddy-nonfree_5.0.9-1~nd90+1_i386.deb Size: 281572 SHA256: b6af18009c62576c00fb8560df3a5f8c8daf537109dede0efc90e30cb7ce48d7 SHA1: 83170e8352cb07df3ac168d7936b033702871a5a MD5sum: 6aa90ef293d6f24747d5b9ce98385d2b Description: correcting eddy currents and movements in diffusion data This package provide the 'eddy' component of the FSL MRI data analysis suite. Since FSL 5.0.9 eddy is no longer included in the main fsl package, because its sources are no longer publicly available. Package: fsl-5.0-eddy-nonfree-dbgsym Source: fsl-eddy-nonfree Version: 5.0.9-1~nd90+1 Architecture: i386 Maintainer: NeuroDebian Team Installed-Size: 2935 Depends: fsl-5.0-eddy-nonfree (= 5.0.9-1~nd90+1) Priority: extra Section: non-free/debug Filename: pool/non-free/f/fsl-eddy-nonfree/fsl-5.0-eddy-nonfree-dbgsym_5.0.9-1~nd90+1_i386.deb Size: 2864832 SHA256: ccae7f77652500b19ca442492df9aae229834ee30e3a98db957eddf9ae13c573 SHA1: 648581339aa2a7cef5063617d839b689905f6c54 MD5sum: 42da5808465697592cd3b7c9cca1ea79 Description: Debug symbols for fsl-5.0-eddy-nonfree Auto-Built-Package: debug-symbols Build-Ids: faa4600d4fb38a983d6b3606c0970af74cf330d0 Package: fsl-core Source: fsl Version: 5.0.9-5~nd90+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 43 Depends: fsl-5.0-core Breaks: fsl (<< 5.0.3) Replaces: fsl (<< 5.0.3) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-core_5.0.9-5~nd90+1_all.deb Size: 21414 SHA256: f10dfd783382de07082157acf62e6c3540085e610c1e4d1ed98589ab409bf4da SHA1: 6c36eb8056e39ba90aa942c5c2036ee58716e827 MD5sum: 1e64c9652ae9bbfe083e10cc1f48f32a Description: metapackage for the latest version of FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. . Users aiming to perform a complete FSL installation (including all data components) are advised to install the 'fsl-complete' package from NeuroDebian. Package: matlab-psychtoolbox-3 Source: psychtoolbox-3-nonfree Version: 3.0.16.20200326-1~ndall+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 19 Depends: matlab-psychtoolbox-3-nonfree (= 3.0.16.20200326-1~ndall+1), psychtoolbox-3-common (>= 3.0.16.20200326-1~ndall+1.dfsg) Recommends: matlab-support Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/matlab-psychtoolbox-3_3.0.16.20200326-1~ndall+1_all.deb Size: 4572 SHA256: f4c6df6d5bb5461d2eddc143d58e9a46a32830c10b9dd2206f47776157416ff6 SHA1: ca383e2ba419baf875cb2d8a94ad648716c23397 MD5sum: 365366139ebe2189b321db75812bf78a Description: toolbox for vision research -- Matlab bindings Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package exposes PTB-3 within Matlab environment. It also provides a convenience script ptb3-matlab to simplify running psychtoolbox in matlab. . See also http://www.psychtoolbox.org/UsingPsychtoolboxOnUbuntu for additional information about systems tune-up and initial configuration. . For now it relies on -nonfree package providing binary builds of all PTB-3 bindings for Matlab. Package: octave-psychtoolbox-3-nonfree Source: psychtoolbox-3-nonfree Version: 3.0.16.20200326-1~ndall+1 Architecture: i386 Maintainer: NeuroDebian Team Installed-Size: 1548 Depends: octave-psychtoolbox-3 (>= 3.0.16.20200326-1~ndall+1.dfsg), psychtoolbox-3-common (>= 3.0.16.20200326-1~ndall+1.dfsg) Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/octave-psychtoolbox-3-nonfree_3.0.16.20200326-1~ndall+1_i386.deb Size: 562414 SHA256: 55dd0b5307ec19b5a6dc2af28270b81df531431a4d134d5a4fa62b35e20ff5f4 SHA1: f4e5ff98dad1cc604c9d6691aafb55ceb6172d17 MD5sum: e49176555209eaddcff240f7d2300712 Description: toolbox for vision research -- Octave binary blobs Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package contains binary builds for Datapixx and Eyelink bindings for Octave built/supported/distributed by upstream. Package: python-fsl Source: fslpy Version: 0.10.0-1~nd90+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 457 Depends: neurodebian-popularity-contest, python-lxml, python-nibabel, cython, python-indexed-gzip, python-matplotlib, python-numpy, python-six (>= 1.10.0), python-sphinx, python-sphinx-rtd-theme, python:any (<< 2.8), python:any (>= 2.7.5-5~) Recommends: python-wxgtk3.0 Conflicts: fsl-melview (<= 1.0.1+git9-ge661e05~dfsg.1-1) Provides: python2.7-fsl Priority: optional Section: non-free/python Filename: pool/non-free/f/fslpy/python-fsl_0.10.0-1~nd90+1_all.deb Size: 94764 SHA256: 5c444727b8046a48882110ab9ea1f152142780d260a3cbe369f6d4d152796337 SHA1: e2bb741eb046d059e547fff1e1f3d7e1e1d63bc6 MD5sum: af282064468736c28feefd8bdeadb451 Description: FSL Python library Support library for FSL. . This package provides the Python 2 module. Package: python-props Source: props Version: 0.9.14-1~nd90+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 650 Depends: neurodebian-popularity-contest, python-wxgtk3.0, python-matplotlib, python-numpy, python-six, python-sphinx, python-sphinx-rtd-theme, python:any (<< 2.8), python:any (>= 2.7.5-5~) Provides: python2.7-props Priority: optional Section: non-free/python Filename: pool/non-free/p/props/python-props_0.9.14-1~nd90+1_all.deb Size: 117932 SHA256: e193bbe46bc55e6e2386179e2a549cb6759740c81d46323964559ae7f125d694 SHA1: 30c69bdcbf04031309d785c9cf765721570c38c8 MD5sum: 20146c501c144c4f7d2ae39ab16ddd18 Description: Python descriptor framework Event programming framework with the ability for automatic CLI generation, and automatic GUI generation (with wxPython). . This package provides the Python 2 module. Package: python3-fsl Source: fslpy Version: 0.10.0-1~nd90+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 454 Depends: neurodebian-popularity-contest, python3-lxml, python3-nibabel, cython3, python3-indexed-gzip, python3-matplotlib, python3-numpy, python3-six (>= 1.10.0), python3-sphinx, python3-sphinx-rtd-theme, python3:any (>= 3.3.2-2~) Priority: optional Section: non-free/python Filename: pool/non-free/f/fslpy/python3-fsl_0.10.0-1~nd90+1_all.deb Size: 94534 SHA256: 2385a49024d82c94456092d48cb8ba5be0ea3f4e1cc3249f742e490ab04331c7 SHA1: 61a167c8d622a0220f8b2ffff84a3bf0f2e6b44e MD5sum: c269f9fe8221e8f3a87c384a16553b5e Description: FSL Python library Support library for FSL. . This package provides the Python 3 module. Package: virtual-mri-nonfree Source: vmri-nonfree Version: 3.2.14-1~nd70+1+nd90+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 3036 Depends: neurodebian-popularity-contest, openjdk-7-jre | java-runtime Homepage: http://www.iftm.de/elearning/vmri/idx_vmri.htm Priority: extra Section: non-free/science Filename: pool/non-free/v/vmri-nonfree/virtual-mri-nonfree_3.2.14-1~nd70+1+nd90+1_all.deb Size: 1771694 SHA256: 651f753605211b134717b49f292f96ad99739203a00bd496d8fb57b0641d3c08 SHA1: a803a50e31872d88aa7b592b8b3ac74073c5cd39 MD5sum: 801ba2e094ef196dc82cad2d02a214eb Description: Virtual Magnetic Resonance Imager A realistic simulation of magnetic reasonance imaging that allows for exploring the most relevant parameters of a scanner to aid training of students and doctors. . At the moment the pulse sequence classes SR, IR, SE, TSE, FLASH and FISP are implemented. Parameters, like TR, TE, TI, flip-angle or echo train length, can be adjusted. The choice of matrix size, FOV, slice-thickness and number of acquisitions affect the signal-to-noise ratio of the images. In a first step, the simulation calculates the signal intensity in the k-space. Aliasing- and motion-artifacts are simulated by modifying the k-space data. In a last step, a 2D-fouriertransform of the k-space data is performed. Window and center of the resulting images can be changed.