Package: fsl Version: 5.0.9-5~nd14.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 56 Depends: fsl-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl_5.0.9-5~nd14.04+1_all.deb Size: 21634 SHA256: eb5fbd9e23cb60d00b92472b980c6e5a12e25e859cd258cdce16985bd96c9da2 SHA1: 918bbdf8670c66b8f2c98e3e988979e984f83e3b MD5sum: db9761829e5c130fa7f1805e2405faf7 Description: transitional dummy package The only purpose of this package is to enable upgrades to the new 'fsl-core' package which replaces 'fsl'. This package can safely be removed. . Users aiming to perform a complete FSL installation (including all data components) are advised to install the 'fsl-complete' package from NeuroDebian. Package: fsl-5.0 Source: fsl Version: 5.0.9-5~nd14.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 52 Depends: fsl-5.0-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl-5.0_5.0.9-5~nd14.04+1_all.deb Size: 20270 SHA256: e381945cedf8056c399b33106911e5133969861205f3b6981443bea19ceda837 SHA1: 1ef4cb5cecefc4a264fb39e6a50adda3f8cf26fa MD5sum: d492856a952afba50dd5654db50b860f Description: transitional dummy package The only purpose of this package is to enable upgrades to the new 'fsl-5.0-core' package which replaces 'fsl-5.0'. This package can safely be removed. . Users aiming to perform a complete FSL 5.0 installation (including all data components) are advised to install the 'fsl-5.0-complete' package from NeuroDebian. Package: fsl-5.0-core Source: fsl Version: 5.0.9-5~nd14.04+1 Architecture: amd64 Maintainer: NeuroDebian Team Installed-Size: 37512 Depends: mozilla-firefox | www-browser, tcsh | c-shell, tk, tcl, bc, dc, python, libjs-excanvas, libc6 (>= 2.14), libgcc1 (>= 1:4.1.1), libgd3 (>= 2.1.0~alpha~), libgdchart-gd2-noxpm | libgdchart-gd2-xpm, libgiftiio0, libnewmat10ldbl, libnifti2, libpng12-0 (>= 1.2.13-4), libstdc++6 (>= 4.6), zlib1g (>= 1:1.1.4) Recommends: fsl-atlases, fsl-5.0-eddy-nonfree, fslview Suggests: fsl-feeds, fsl-5.0-gpu, octave, mriconvert | dicomnifti, fsl-complete, condor | gridengine-client Conflicts: fsl-doc-4.1 (<< 4.1.9-5~), fsl-fslview Breaks: fsl-5.0 (<< 5.0.3) Replaces: fsl-5.0 (<< 5.0.3) Provides: fsl Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-5.0-core_5.0.9-5~nd14.04+1_amd64.deb Size: 7644992 SHA256: add51b0dff3aa30ab9e55d95f4a724f204488ecf22d833c002435f8685b626af SHA1: 77f9428363179cb94f10d4813ad57572a0efccbc MD5sum: 7d9a60ff8bbe43a7d17719c8b4b0cb43 Description: analysis tools for FMRI, MRI and DTI brain imaging FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. . Users aiming to perform a complete FSL 5.0 installation (including all data components) are advised to install the 'fsl-5.0-complete' package from NeuroDebian. . FSL interoperates well with other brain imaging related software. This includes Caret, FreeSurfer (cortical flattening and modelling). All FSL tools support the NIfTI format. Package: fsl-5.0-eddy-nonfree Source: fsl-eddy-nonfree Version: 5.0.9-1~nd14.04+1 Architecture: amd64 Maintainer: NeuroDebian Team Installed-Size: 794 Depends: neurodebian-popularity-contest, fsl-5.0-core (>= 5.0.9-1~), libc6 (>= 2.14), libgcc1 (>= 1:4.1.1), libnewmat10ldbl, libstdc++6 (>= 4.4.0) Conflicts: fsl-5.0-core (<< 5.0.9) Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl-eddy-nonfree/fsl-5.0-eddy-nonfree_5.0.9-1~nd14.04+1_amd64.deb Size: 254868 SHA256: ac52be6b5b4c93e80b1ab146bbace64c68ee548560e15e5ded985158cc9ce485 SHA1: afff1f2a41bdd694123ee2c28705b757308b1187 MD5sum: 6fe2532f41145ffdeae6d481491ba9cd Description: correcting eddy currents and movements in diffusion data This package provide the 'eddy' component of the FSL MRI data analysis suite. Since FSL 5.0.9 eddy is no longer included in the main fsl package, because its sources are no longer publicly available. Package: fsl-core Source: fsl Version: 5.0.9-5~nd14.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 70 Depends: fsl-5.0-core Breaks: fsl (<< 5.0.3) Replaces: fsl (<< 5.0.3) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-core_5.0.9-5~nd14.04+1_all.deb Size: 21456 SHA256: 9d452a421d2ae96ebee8706197793773c774b3ecc5ff016d0ff9fa11d0a38588 SHA1: 08e0fc21492561e8c4066c09965db07391df47bf MD5sum: f1262813e122ad61600aabac59c8b1d5 Description: metapackage for the latest version of FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. . Users aiming to perform a complete FSL installation (including all data components) are advised to install the 'fsl-complete' package from NeuroDebian. Package: matlab-psychtoolbox-3 Source: psychtoolbox-3-nonfree Version: 3.0.16.20200326-1~ndall+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 19 Depends: matlab-psychtoolbox-3-nonfree (= 3.0.16.20200326-1~ndall+1), psychtoolbox-3-common (>= 3.0.16.20200326-1~ndall+1.dfsg) Recommends: matlab-support Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/matlab-psychtoolbox-3_3.0.16.20200326-1~ndall+1_all.deb Size: 4572 SHA256: f4c6df6d5bb5461d2eddc143d58e9a46a32830c10b9dd2206f47776157416ff6 SHA1: ca383e2ba419baf875cb2d8a94ad648716c23397 MD5sum: 365366139ebe2189b321db75812bf78a Description: toolbox for vision research -- Matlab bindings Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package exposes PTB-3 within Matlab environment. It also provides a convenience script ptb3-matlab to simplify running psychtoolbox in matlab. . See also http://www.psychtoolbox.org/UsingPsychtoolboxOnUbuntu for additional information about systems tune-up and initial configuration. . For now it relies on -nonfree package providing binary builds of all PTB-3 bindings for Matlab. Package: matlab-psychtoolbox-3-nonfree Source: psychtoolbox-3-nonfree Version: 3.0.16.20200326-1~ndall+1 Architecture: amd64 Maintainer: NeuroDebian Team Installed-Size: 5124 Depends: psychtoolbox-3-lib (>= 3.0.16.20200326-1~ndall+1.dfsg), psychtoolbox-3-common (>= 3.0.16.20200326-1~ndall+1.dfsg), libx11-6, libxext6, libxfixes3, libxi6, freeglut3, libgl1-mesa-glx, libxmu6, libxpm4 Recommends: libasound2, libdc1394-22, libfreenect0.1, libglib2.0-0, libglu1-mesa, libopenal1, libpciaccess0, libusb-1.0-0 (>= 2:1.0.9~), libxml2, libxrandr2, libxxf86vm1 Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/matlab-psychtoolbox-3-nonfree_3.0.16.20200326-1~ndall+1_amd64.deb Size: 1690146 SHA256: 065b7bbff60dca1f44d8aa6eac807bb4f8bd3731a67706eeba27757539110acc SHA1: ed7ea5340e6b929d79030f618e1f9ff3a80c5370 MD5sum: 37e5a829d1026fddb34f620c0044ccd5 Description: toolbox for vision research -- Matlab binary blobs Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package contains binary builds for Datapixx and Eyelink bindings for Matlab built/supported/distributed by upstream. Package: octave-psychtoolbox-3-nonfree Source: psychtoolbox-3-nonfree Version: 3.0.16.20200326-1~ndall+1 Architecture: amd64 Maintainer: NeuroDebian Team Installed-Size: 2099 Depends: octave-psychtoolbox-3 (>= 3.0.16.20200326-1~ndall+1.dfsg), psychtoolbox-3-common (>= 3.0.16.20200326-1~ndall+1.dfsg) Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/octave-psychtoolbox-3-nonfree_3.0.16.20200326-1~ndall+1_amd64.deb Size: 687950 SHA256: f8c123dc05836c1e8f4aa65c9f7c528a3defaffa4579eae71cb04ea93b71d7e8 SHA1: 582ba5c676e351b0c552d76fe2c7259cd36ce874 MD5sum: e92a8bdd2f8dc4272aaa36112ed53def Description: toolbox for vision research -- Octave binary blobs Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package contains binary builds for Datapixx and Eyelink bindings for Octave built/supported/distributed by upstream. Package: python-props Source: props Version: 0.9.14-1~nd14.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 665 Depends: neurodebian-popularity-contest, python-wxgtk3.0, python:any (>= 2.7.5-5~), python-six, python-numpy, python-matplotlib, python-sphinx, python:any (<< 2.8), python-sphinx-rtd-theme Provides: python2.7-props Priority: optional Section: non-free/python Filename: pool/non-free/p/props/python-props_0.9.14-1~nd14.04+1_all.deb Size: 118350 SHA256: c9ff495d2e9c0ca6fb79c4fc4f887af8240b8c855f4b6c9b43878a6d4c5ad66a SHA1: e447e994d1f2ac4625a760ef2f4a64802d780370 MD5sum: db80cb4e0132b79686df6acd3d2de56b Description: Python descriptor framework Event programming framework with the ability for automatic CLI generation, and automatic GUI generation (with wxPython). . This package provides the Python 2 module. Package: virtual-mri-nonfree Source: vmri-nonfree Version: 3.2.14-1~nd12.10+1+nd13.04+1+nd13.10+1+nd14.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 3020 Depends: neurodebian-popularity-contest, openjdk-7-jre | java-runtime Homepage: http://www.iftm.de/elearning/vmri/idx_vmri.htm Priority: extra Section: non-free/science Filename: pool/non-free/v/vmri-nonfree/virtual-mri-nonfree_3.2.14-1~nd12.10+1+nd13.04+1+nd13.10+1+nd14.04+1_all.deb Size: 1771702 SHA256: 2bf1087b73a5ae7c163ee7d37e5cbb911f3b5d22350b21f3703202cfe53362b4 SHA1: 20fc295238e534c298d4fbe04e9514189749866b MD5sum: 2df66e108c5e49eff77c0b0adb7ad92e Description: Virtual Magnetic Resonance Imager A realistic simulation of magnetic reasonance imaging that allows for exploring the most relevant parameters of a scanner to aid training of students and doctors. . At the moment the pulse sequence classes SR, IR, SE, TSE, FLASH and FISP are implemented. Parameters, like TR, TE, TI, flip-angle or echo train length, can be adjusted. The choice of matrix size, FOV, slice-thickness and number of acquisitions affect the signal-to-noise ratio of the images. In a first step, the simulation calculates the signal intensity in the k-space. Aliasing- and motion-artifacts are simulated by modifying the k-space data. In a last step, a 2D-fouriertransform of the k-space data is performed. Window and center of the resulting images can be changed.