Package: fsl Version: 5.0.9-5~nd16.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 39 Depends: fsl-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl_5.0.9-5~nd16.04+1_all.deb Size: 21642 SHA256: 6018f87de75d5bade1eefba97123ec234f66e0de6ba7964d0edeba39790e9537 SHA1: 89ef96722f57eaf8ab0b8b13804db8e13c79f90f MD5sum: 0cfcf403d60f7713b69edef54bc2e03e Description: transitional dummy package The only purpose of this package is to enable upgrades to the new 'fsl-core' package which replaces 'fsl'. This package can safely be removed. . Users aiming to perform a complete FSL installation (including all data components) are advised to install the 'fsl-complete' package from NeuroDebian. Package: fsl-5.0 Source: fsl Version: 5.0.9-5~nd16.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 35 Depends: fsl-5.0-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl-5.0_5.0.9-5~nd16.04+1_all.deb Size: 20274 SHA256: 5c0a44cb062695d70c32acea2f271640974ef8d3b4d5356d89d1c6d8757290bf SHA1: 5e9a284c58fc56079a96119e0121e48c09c80edc MD5sum: 31ddc0ed369e59712aad0372fcf43898 Description: transitional dummy package The only purpose of this package is to enable upgrades to the new 'fsl-5.0-core' package which replaces 'fsl-5.0'. This package can safely be removed. . Users aiming to perform a complete FSL 5.0 installation (including all data components) are advised to install the 'fsl-5.0-complete' package from NeuroDebian. Package: fsl-5.0-core Source: fsl Version: 5.0.9-5~nd16.04+1 Architecture: i386 Maintainer: NeuroDebian Team Installed-Size: 38937 Depends: mozilla-firefox | www-browser, tcsh | c-shell, tk, tcl, bc, dc, python, libjs-excanvas, libc6 (>= 2.11), libgcc1 (>= 1:4.2), libgd3 (>= 2.1.0~alpha~), libgdchart-gd2-noxpm | libgdchart-gd2-xpm, libgiftiio0, libnewmat10ldbl, libnifti2, libpng12-0 (>= 1.2.13-4), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4) Recommends: fsl-atlases, fsl-5.0-eddy-nonfree, fslview Suggests: fsl-feeds, fsl-5.0-gpu, octave, mriconvert | dicomnifti, fsl-complete, condor | gridengine-client Conflicts: fsl-doc-4.1 (<< 4.1.9-5~), fsl-fslview Breaks: fsl-5.0 (<< 5.0.3) Replaces: fsl-5.0 (<< 5.0.3) Provides: fsl Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-5.0-core_5.0.9-5~nd16.04+1_i386.deb Size: 7778858 SHA256: 33a61f6f576c6cf77be6975fa070fcdc3c87fe6ff7cb4dd3d8c231dd72d643d6 SHA1: 973b00a8d1f9183d23a8a24882418d232226a134 MD5sum: b32bbafa3183e2adca50e2843333d845 Description: analysis tools for FMRI, MRI and DTI brain imaging FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. . Users aiming to perform a complete FSL 5.0 installation (including all data components) are advised to install the 'fsl-5.0-complete' package from NeuroDebian. . FSL interoperates well with other brain imaging related software. This includes Caret, FreeSurfer (cortical flattening and modelling). All FSL tools support the NIfTI format. Package: fsl-5.0-eddy-nonfree Source: fsl-eddy-nonfree Version: 5.0.9-1~nd16.04+1 Architecture: i386 Maintainer: NeuroDebian Team Installed-Size: 803 Depends: neurodebian-popularity-contest, fsl-5.0-core (>= 5.0.9-1~), libc6 (>= 2.4), libgcc1 (>= 1:3.0), libnewmat10ldbl, libstdc++6 (>= 5.2) Conflicts: fsl-5.0-core (<< 5.0.9) Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl-eddy-nonfree/fsl-5.0-eddy-nonfree_5.0.9-1~nd16.04+1_i386.deb Size: 281546 SHA256: 5224d228a9c5f5541a8dde2e6444f52ced9df3adc8025e3e54937ba7d1026db3 SHA1: 55e18e8355c42b3c89f12b10b584263646072423 MD5sum: cdb914ff7871c274b1b930732b1c7bd1 Description: correcting eddy currents and movements in diffusion data This package provide the 'eddy' component of the FSL MRI data analysis suite. Since FSL 5.0.9 eddy is no longer included in the main fsl package, because its sources are no longer publicly available. Package: fsl-core Source: fsl Version: 5.0.9-5~nd16.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 43 Depends: fsl-5.0-core Breaks: fsl (<< 5.0.3) Replaces: fsl (<< 5.0.3) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-core_5.0.9-5~nd16.04+1_all.deb Size: 21462 SHA256: 5c96b80028c839ae1e33459fe4e5e4a8389bad261ce15511a66cd9e55fba3c2e SHA1: 4865f7624abeb886f5cb18285ca436dd9f7e52be MD5sum: 1ea4230f2fb989e37ddb90d4064a838e Description: metapackage for the latest version of FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. . Users aiming to perform a complete FSL installation (including all data components) are advised to install the 'fsl-complete' package from NeuroDebian. Package: matlab-psychtoolbox-3 Source: psychtoolbox-3-nonfree Version: 3.0.16.20200326-1~ndall+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 19 Depends: matlab-psychtoolbox-3-nonfree (= 3.0.16.20200326-1~ndall+1), psychtoolbox-3-common (>= 3.0.16.20200326-1~ndall+1.dfsg) Recommends: matlab-support Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/matlab-psychtoolbox-3_3.0.16.20200326-1~ndall+1_all.deb Size: 4572 SHA256: f4c6df6d5bb5461d2eddc143d58e9a46a32830c10b9dd2206f47776157416ff6 SHA1: ca383e2ba419baf875cb2d8a94ad648716c23397 MD5sum: 365366139ebe2189b321db75812bf78a Description: toolbox for vision research -- Matlab bindings Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package exposes PTB-3 within Matlab environment. It also provides a convenience script ptb3-matlab to simplify running psychtoolbox in matlab. . See also http://www.psychtoolbox.org/UsingPsychtoolboxOnUbuntu for additional information about systems tune-up and initial configuration. . For now it relies on -nonfree package providing binary builds of all PTB-3 bindings for Matlab. Package: octave-psychtoolbox-3-nonfree Source: psychtoolbox-3-nonfree Version: 3.0.16.20200326-1~ndall+1 Architecture: i386 Maintainer: NeuroDebian Team Installed-Size: 1548 Depends: octave-psychtoolbox-3 (>= 3.0.16.20200326-1~ndall+1.dfsg), psychtoolbox-3-common (>= 3.0.16.20200326-1~ndall+1.dfsg) Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/octave-psychtoolbox-3-nonfree_3.0.16.20200326-1~ndall+1_i386.deb Size: 562414 SHA256: 55dd0b5307ec19b5a6dc2af28270b81df531431a4d134d5a4fa62b35e20ff5f4 SHA1: f4e5ff98dad1cc604c9d6691aafb55ceb6172d17 MD5sum: e49176555209eaddcff240f7d2300712 Description: toolbox for vision research -- Octave binary blobs Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package contains binary builds for Datapixx and Eyelink bindings for Octave built/supported/distributed by upstream. Package: python-fsl Source: fslpy Version: 0.10.0-1~nd16.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 457 Depends: neurodebian-popularity-contest, python-lxml, python-nibabel, cython, python-indexed-gzip, python-matplotlib, python-numpy, python-six (>= 1.10.0), python-sphinx, python-sphinx-rtd-theme, python:any (<< 2.8), python:any (>= 2.7.5-5~) Recommends: python-wxgtk3.0 Conflicts: fsl-melview (<= 1.0.1+git9-ge661e05~dfsg.1-1) Provides: python2.7-fsl Priority: optional Section: non-free/python Filename: pool/non-free/f/fslpy/python-fsl_0.10.0-1~nd16.04+1_all.deb Size: 94870 SHA256: 76d8a8cd4c04ccd82859397eec10b98bff10aa39c9342448ae72e46e8b96e173 SHA1: 47d484f9c3e650841537b7d5659ff4ef6ab2229a MD5sum: ea5db012cf0b9a13a2b6760a1f748542 Description: FSL Python library Support library for FSL. . This package provides the Python 2 module. Package: python-props Source: props Version: 0.9.14-1~nd16.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 650 Depends: neurodebian-popularity-contest, python-wxgtk3.0, python-matplotlib, python-numpy, python-six, python-sphinx, python-sphinx-rtd-theme, python:any (<< 2.8), python:any (>= 2.7.5-5~) Provides: python2.7-props Priority: optional Section: non-free/python Filename: pool/non-free/p/props/python-props_0.9.14-1~nd16.04+1_all.deb Size: 118262 SHA256: 4ff4329bacb2c91892197fcbe46dd118667828d4aa92c6b3d830c11519147782 SHA1: 717abb1bb555c2fca77552f7fcd56318f1ad050a MD5sum: b3c461312c38f5b346c207bd0669fea3 Description: Python descriptor framework Event programming framework with the ability for automatic CLI generation, and automatic GUI generation (with wxPython). . This package provides the Python 2 module. Package: python3-fsl Source: fslpy Version: 0.10.0-1~nd16.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 454 Depends: neurodebian-popularity-contest, python3-lxml, python3-nibabel, cython3, python3-indexed-gzip, python3-matplotlib, python3-numpy, python3-six (>= 1.10.0), python3-sphinx, python3-sphinx-rtd-theme, python3:any (>= 3.3.2-2~) Priority: optional Section: non-free/python Filename: pool/non-free/f/fslpy/python3-fsl_0.10.0-1~nd16.04+1_all.deb Size: 94616 SHA256: ed1b3d9932a52f1f32ff986a493cdcd38385e50d836d341d78534040fa952ae7 SHA1: 7e00ead7a8ddf0bf5cba55f3a3fdff8f459f848c MD5sum: 81a6496b58e9302e1af4120c71755119 Description: FSL Python library Support library for FSL. . This package provides the Python 3 module. Package: virtual-mri-nonfree Source: vmri-nonfree Version: 3.2.14-1~nd+1+nd16.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 3036 Depends: neurodebian-popularity-contest, openjdk-7-jre | java-runtime Homepage: http://www.iftm.de/elearning/vmri/idx_vmri.htm Priority: extra Section: non-free/science Filename: pool/non-free/v/vmri-nonfree/virtual-mri-nonfree_3.2.14-1~nd+1+nd16.04+1_all.deb Size: 1771398 SHA256: 42ce1ae866a5e9b4d0564629b0c07cfe4ab85ecd7dbde7dd2e4d6779383d1541 SHA1: 2966fb73e4b00f10da6e23e344c5eadc3bd875d6 MD5sum: 93f47649bd0924f87b17227a8f8edf60 Description: Virtual Magnetic Resonance Imager A realistic simulation of magnetic reasonance imaging that allows for exploring the most relevant parameters of a scanner to aid training of students and doctors. . At the moment the pulse sequence classes SR, IR, SE, TSE, FLASH and FISP are implemented. Parameters, like TR, TE, TI, flip-angle or echo train length, can be adjusted. The choice of matrix size, FOV, slice-thickness and number of acquisitions affect the signal-to-noise ratio of the images. In a first step, the simulation calculates the signal intensity in the k-space. Aliasing- and motion-artifacts are simulated by modifying the k-space data. In a last step, a 2D-fouriertransform of the k-space data is performed. Window and center of the resulting images can be changed.