Package: fsl Version: 5.0.9-4~nd17.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 39 Depends: fsl-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl_5.0.9-4~nd17.04+1_all.deb Size: 21614 SHA256: 5db1dbcc95ac1013a56797e8166bf435c83b27b3bc7fe105676702b97fe9fc4a SHA1: 79564264d0d82f3720518a29949ac921202e0f60 MD5sum: f4650553a9789de4202bcbc066cc5bd8 Description: transitional dummy package The only purpose of this package is to enable upgrades to the new 'fsl-core' package which replaces 'fsl'. This package can safely be removed. . Users aiming to perform a complete FSL installation (including all data components) are advised to install the 'fsl-complete' package from NeuroDebian. Package: fsl-5.0 Source: fsl Version: 5.0.9-4~nd17.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 35 Depends: fsl-5.0-core Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/oldlibs Filename: pool/non-free/f/fsl/fsl-5.0_5.0.9-4~nd17.04+1_all.deb Size: 20192 SHA256: b38acbf8a878e10a96959724d5d92077c1f07b7037996163b5769a98fa94642a SHA1: 1373a5a390b1eefec6c2240e0314c1049ad64204 MD5sum: f14b06874ce63062be77187cd3fe7d76 Description: transitional dummy package The only purpose of this package is to enable upgrades to the new 'fsl-5.0-core' package which replaces 'fsl-5.0'. This package can safely be removed. . Users aiming to perform a complete FSL 5.0 installation (including all data components) are advised to install the 'fsl-5.0-complete' package from NeuroDebian. Package: fsl-5.0-core Source: fsl Version: 5.0.9-4~nd17.04+1 Architecture: i386 Maintainer: NeuroDebian Team Installed-Size: 39547 Depends: mozilla-firefox | www-browser, tcsh | c-shell, tk, tcl, bc, dc, python, libjs-excanvas, libc6 (>= 2.11), libgcc1 (>= 1:4.2), libgd3 (>= 2.1.0~alpha~), libgdchart-gd2-noxpm | libgdchart-gd2-xpm, libgiftiio0, libnewmat10ldbl, libnifti2, libpng16-16 (>= 1.6.2-1), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4) Recommends: fsl-atlases, fsl-5.0-eddy-nonfree, fslview Suggests: fsl-feeds, fsl-5.0-gpu, octave, mriconvert | dicomnifti, fsl-complete, condor | gridengine-client Conflicts: fsl-doc-4.1 (<< 4.1.9-5~), fsl-fslview Breaks: fsl-5.0 (<< 5.0.3) Replaces: fsl-5.0 (<< 5.0.3) Provides: fsl Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-5.0-core_5.0.9-4~nd17.04+1_i386.deb Size: 8388674 SHA256: cb59f75b43fe293f5bea23ef4c7871a12c9443238ce7012bc24ef590d9a67fe7 SHA1: 956931255eabbbf337abeb61a1a1b48a4a5c9db9 MD5sum: a8dd0e45e19dc3d36b6e57915f337375 Description: analysis tools for FMRI, MRI and DTI brain imaging FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. . Users aiming to perform a complete FSL 5.0 installation (including all data components) are advised to install the 'fsl-5.0-complete' package from NeuroDebian. . FSL interoperates well with other brain imaging related software. This includes Caret, FreeSurfer (cortical flattening and modelling). All FSL tools support the NIfTI format. Package: fsl-core Source: fsl Version: 5.0.9-4~nd17.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 43 Depends: fsl-5.0-core Breaks: fsl (<< 5.0.3) Replaces: fsl (<< 5.0.3) Homepage: http://www.fmrib.ox.ac.uk/fsl/ Priority: optional Section: non-free/science Filename: pool/non-free/f/fsl/fsl-core_5.0.9-4~nd17.04+1_all.deb Size: 21386 SHA256: 6d91f7c277e62f07116a7e89d590c65ccbf2419c6fd41cabd81e9ac3b7044670 SHA1: 8cb874d3b894ec98803f8fdccb041c305b8e3cef MD5sum: 4d9d9b07bd605a3ff5d3c2f49c8b50b0 Description: metapackage for the latest version of FSL FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. The suite consists of various command line tools, as well as simple GUIs for its core analysis pipelines. Among others, FSL offers implementations of standard GLM analysis, white matter tractography, tissue segmentation, affine and non-linear co-registration, and independent component analysis. . Some FSL components require additional data packages (fsl-atlases, fsl-first-data, fsl-possum-data) that are currently available from the NeuroDebian repository only. For more information on how to obtain these data packages visit http://neuro.debian.net. . Users aiming to perform a complete FSL installation (including all data components) are advised to install the 'fsl-complete' package from NeuroDebian. Package: matlab-psychtoolbox-3 Source: psychtoolbox-3-nonfree Version: 3.0.16.20200326-1~ndall+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 19 Depends: matlab-psychtoolbox-3-nonfree (= 3.0.16.20200326-1~ndall+1), psychtoolbox-3-common (>= 3.0.16.20200326-1~ndall+1.dfsg) Recommends: matlab-support Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/matlab-psychtoolbox-3_3.0.16.20200326-1~ndall+1_all.deb Size: 4572 SHA256: f4c6df6d5bb5461d2eddc143d58e9a46a32830c10b9dd2206f47776157416ff6 SHA1: ca383e2ba419baf875cb2d8a94ad648716c23397 MD5sum: 365366139ebe2189b321db75812bf78a Description: toolbox for vision research -- Matlab bindings Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package exposes PTB-3 within Matlab environment. It also provides a convenience script ptb3-matlab to simplify running psychtoolbox in matlab. . See also http://www.psychtoolbox.org/UsingPsychtoolboxOnUbuntu for additional information about systems tune-up and initial configuration. . For now it relies on -nonfree package providing binary builds of all PTB-3 bindings for Matlab. Package: octave-psychtoolbox-3-nonfree Source: psychtoolbox-3-nonfree Version: 3.0.16.20200326-1~ndall+1 Architecture: i386 Maintainer: NeuroDebian Team Installed-Size: 1548 Depends: octave-psychtoolbox-3 (>= 3.0.16.20200326-1~ndall+1.dfsg), psychtoolbox-3-common (>= 3.0.16.20200326-1~ndall+1.dfsg) Homepage: http://psychtoolbox.org Priority: extra Section: non-free/science Filename: pool/non-free/p/psychtoolbox-3-nonfree/octave-psychtoolbox-3-nonfree_3.0.16.20200326-1~ndall+1_i386.deb Size: 562414 SHA256: 55dd0b5307ec19b5a6dc2af28270b81df531431a4d134d5a4fa62b35e20ff5f4 SHA1: f4e5ff98dad1cc604c9d6691aafb55ceb6172d17 MD5sum: e49176555209eaddcff240f7d2300712 Description: toolbox for vision research -- Octave binary blobs Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU/Octave functions for vision research. It makes it easy to synthesize and show accurately controlled visual and auditory stimuli and interact with the observer. . The Psychophysics Toolbox interfaces between Matlab or Octave and the computer hardware. The Psychtoolbox's core routines provide access to the display frame buffer and color lookup table, allow synchronization with the vertical retrace, support millisecond timing, allow access to OpenGL commands, and facilitate the collection of observer responses. Ancillary routines support common needs like color space transformations and the QUEST threshold seeking algorithm. . This package contains binary builds for Datapixx and Eyelink bindings for Octave built/supported/distributed by upstream. Package: python-fsl Source: fslpy Version: 0.10.0-1~nd90+1+nd17.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 457 Depends: neurodebian-popularity-contest, python-lxml, python-nibabel, cython, python-indexed-gzip, python-matplotlib, python-numpy, python-six (>= 1.10.0), python-sphinx, python-sphinx-rtd-theme, python:any (<< 2.8), python:any (>= 2.7.5-5~) Recommends: python-wxgtk3.0 Conflicts: fsl-melview (<= 1.0.1+git9-ge661e05~dfsg.1-1) Provides: python2.7-fsl Priority: optional Section: non-free/python Filename: pool/non-free/f/fslpy/python-fsl_0.10.0-1~nd90+1+nd17.04+1_all.deb Size: 94850 SHA256: ded467b82a1199e456183f47b2e4b52d3d2e0211f5203a3e6a697f005989636c SHA1: 64b1919cfe8aa4cce9bd9de6ac951535833809e6 MD5sum: 782e3e0ca5fe6ff7d3863d852c9537b5 Description: FSL Python library Support library for FSL. . This package provides the Python 2 module. Package: python-props Source: props Version: 0.9.14-1~nd90+1+nd17.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 650 Depends: neurodebian-popularity-contest, python-wxgtk3.0, python-matplotlib, python-numpy, python-six, python-sphinx, python-sphinx-rtd-theme, python:any (<< 2.8), python:any (>= 2.7.5-5~) Provides: python2.7-props Priority: optional Section: non-free/python Filename: pool/non-free/p/props/python-props_0.9.14-1~nd90+1+nd17.04+1_all.deb Size: 118020 SHA256: 59290acda4eb14bd2a8c7b7ee3608e07a44865cb27eacb9ea494a50bce647427 SHA1: 34b60d2e58028d19ecb6f7f97f201b5098f755f3 MD5sum: 0b4a5f9faa097ed69d5200c43a31d909 Description: Python descriptor framework Event programming framework with the ability for automatic CLI generation, and automatic GUI generation (with wxPython). . This package provides the Python 2 module. Package: python3-fsl Source: fslpy Version: 0.10.0-1~nd90+1+nd17.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 454 Depends: neurodebian-popularity-contest, python3-lxml, python3-nibabel, cython3, python3-indexed-gzip, python3-matplotlib, python3-numpy, python3-six (>= 1.10.0), python3-sphinx, python3-sphinx-rtd-theme, python3:any (>= 3.3.2-2~) Priority: optional Section: non-free/python Filename: pool/non-free/f/fslpy/python3-fsl_0.10.0-1~nd90+1+nd17.04+1_all.deb Size: 94626 SHA256: fbfb7980a10d050fd12b7c4122e0f3bf9faaa3dcb6e3c6cae52a10ef8566b91d SHA1: 557fac1db77b3c8b20ee1a139f842a584710baee MD5sum: a27b50a257bfc6e678db03fe64e6a781 Description: FSL Python library Support library for FSL. . This package provides the Python 3 module. Package: virtual-mri-nonfree Source: vmri-nonfree Version: 3.2.14-1~nd70+1+nd90+1+nd17.04+1 Architecture: all Maintainer: NeuroDebian Team Installed-Size: 3036 Depends: neurodebian-popularity-contest, openjdk-7-jre | java-runtime Homepage: http://www.iftm.de/elearning/vmri/idx_vmri.htm Priority: extra Section: non-free/science Filename: pool/non-free/v/vmri-nonfree/virtual-mri-nonfree_3.2.14-1~nd70+1+nd90+1+nd17.04+1_all.deb Size: 1770862 SHA256: 75fea929f0513c647aa6058f6dfd4733227fa1d7d89f4158c8d0666a53a9a17a SHA1: 4462983a992f3ebffe0bd3c538731f4435781581 MD5sum: 96367d6edb314589bf329524bef7ac64 Description: Virtual Magnetic Resonance Imager A realistic simulation of magnetic reasonance imaging that allows for exploring the most relevant parameters of a scanner to aid training of students and doctors. . At the moment the pulse sequence classes SR, IR, SE, TSE, FLASH and FISP are implemented. Parameters, like TR, TE, TI, flip-angle or echo train length, can be adjusted. The choice of matrix size, FOV, slice-thickness and number of acquisitions affect the signal-to-noise ratio of the images. In a first step, the simulation calculates the signal intensity in the k-space. Aliasing- and motion-artifacts are simulated by modifying the k-space data. In a last step, a 2D-fouriertransform of the k-space data is performed. Window and center of the resulting images can be changed.