Chronux is an open-source software package being developed for the analysis of neural data. It is a collaborative research effort based at the Mitra Lab in Cold Spring Harbor Laboratory that has grown out of the work of several groups.

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Information theoretic methods are now widely used for the analysis of spike train data. However, developing robust implementations of these methods can be tedious and time-consuming. In order to facilitate further adoption of these methods, the Spike Train Analysis Toolkit implements several information-theoretic spike train analysis techniques.

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Emergent is a major rewrite of the widely used PDP++ system.

Emergent simulator

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IQR provides an efficient graphical environment to design large-scale multi-level neuronal systems that can control real-world devices – robots in the broader sense – in real-time.
IQR has been released as open-source under GNU General Public License (GPL)

IQR neuronal simulator

IRQ is written by Ulysses Bernardet, Institute of Neuroinformatics
University, ETH Zurich.

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